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The map label for this gene is ydcO [H]

Identifier: 13474224

GI number: 13474224

Start: 4010987

End: 4012135

Strand: Direct

Name: ydcO [H]

Synonym: mlr5064

Alternate gene names: 13474224

Gene position: 4010987-4012135 (Clockwise)

Preceding gene: 13474223

Following gene: 13474226

Centisome position: 57.01

GC content: 66.58

Gene sequence:

>1149_bases
GTGACGATGCGCCTTTCCATTCCGATCTCGGCCTTCGTGGCGGCAATCGTCGGCTTTGGCGGCACGCTGGCCATCGTCAT
TGCCGCCGCCCACGCGGTCGGCGCGACGCAAATTCAGACGGCAAGCTGGGTGACGGCGATTTGCCTGGCCATGGCGATCG
AGAGCCTGTGGCTGTCCTGGCGCACCAAAATGCCTGTCATCACCGCGTGGTCGACCCCAGGCCTGGCGCTGATGGCGGCA
TCGAGCGGCTTTTCGATCGGCGAAGCCGTGGCCGCCTTCATCGTCACCGCCATCCTGTTGATCGCCACCGGTCTGTTCCG
GCCCCTGACGCAATTGATCTCCAGGATACCGCCCTCGGTCGCTTCCGGCATGCTGGCCGGCATTGTCGTTACCTTCGCCC
TCAACGCGGTCAAGACCGTTCCCGTCGACCCCTGGCTGATCCTGCCGCTGATCGCGGCCTTCTTCTTGATCCGCGTGTTC
CACCCGGCGCTGTCGGTGCTGGCGGTGCTGGTCGGCGGCGGTCTCGCCGCGTTTCTCACCGGCCGTGTCGGCGGCTTGCC
GACCCCCGAACTGTCGACGCTGACGCTGATCGCGCCTGATTTCACCGCCAAGGCGATGATTGGCCTGGCGCTGCCGCTCT
ATCTCGTCACCATGGCCTCGCAGAACCTGTCGGGGCTGGCCGTGCTGCGCGCCGCCGGCTACCACCCGGAGCCCGGCCCG
CTGATCGGCGTCACCGGCCTGTTTTCCCTGCTGTCGGCGCCGTTCGGCGGCTCGACCACCAATCTGGCGGCGATTTCGGC
GGCGATCTGCACTGGGCCGGACGTCCATCCCGACCCCGCCGAGCGCTGGAAGACCGGCCCCTTCTATGCGCTCGCCTATG
TCATCTTCGCGATTTTCGGCGCGTCGCTGGTGGCGATCTTCGCCGTCCTGCCGCAAAGCCTGATCGTGCTGGTGGCGGGT
CTGGCGCTGATGGCCTCGCTGGCCAACGCGCTGGCGATCGCGCTGAAGGATGAGGGCGACCGCATGGCCGCCATCGTCAC
CTTTGTCGTCACCGCTTCGGGATTGACCCTGTTCGGCGTTGGCGCGGCATTCTGGGGGCTGATCGCAGGGCTGGTCGTGC
TTTTCCTCGACAGGCTCAAAAAGCGATAG

Upstream 100 bases:

>100_bases
TCACGCTGTCGCTCATTCCCGATGGCGACCACCGCCTGTCGCGACCGCAGGATCTCGACATGCTGGTGCGGGCGGTCGGC
GACATGGCCGGGCGGGACAA

Downstream 100 bases:

>100_bases
TCATTTCAAACCCTTGTCCGGTTTTGGCGGACATTGTCTTGAATCGCCGTTTTTGCCTTCCCATTTCGATTCCACGCAGC
CGGTCCTGGCTGTCTCCAAC

Product: benzoate transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MTMRLSIPISAFVAAIVGFGGTLAIVIAAAHAVGATQIQTASWVTAICLAMAIESLWLSWRTKMPVITAWSTPGLALMAA
SSGFSIGEAVAAFIVTAILLIATGLFRPLTQLISRIPPSVASGMLAGIVVTFALNAVKTVPVDPWLILPLIAAFFLIRVF
HPALSVLAVLVGGGLAAFLTGRVGGLPTPELSTLTLIAPDFTAKAMIGLALPLYLVTMASQNLSGLAVLRAAGYHPEPGP
LIGVTGLFSLLSAPFGGSTTNLAAISAAICTGPDVHPDPAERWKTGPFYALAYVIFAIFGASLVAIFAVLPQSLIVLVAG
LALMASLANALAIALKDEGDRMAAIVTFVVTASGLTLFGVGAAFWGLIAGLVVLFLDRLKKR

Sequences:

>Translated_382_residues
MTMRLSIPISAFVAAIVGFGGTLAIVIAAAHAVGATQIQTASWVTAICLAMAIESLWLSWRTKMPVITAWSTPGLALMAA
SSGFSIGEAVAAFIVTAILLIATGLFRPLTQLISRIPPSVASGMLAGIVVTFALNAVKTVPVDPWLILPLIAAFFLIRVF
HPALSVLAVLVGGGLAAFLTGRVGGLPTPELSTLTLIAPDFTAKAMIGLALPLYLVTMASQNLSGLAVLRAAGYHPEPGP
LIGVTGLFSLLSAPFGGSTTNLAAISAAICTGPDVHPDPAERWKTGPFYALAYVIFAIFGASLVAIFAVLPQSLIVLVAG
LALMASLANALAIALKDEGDRMAAIVTFVVTASGLTLFGVGAAFWGLIAGLVVLFLDRLKKR
>Mature_381_residues
TMRLSIPISAFVAAIVGFGGTLAIVIAAAHAVGATQIQTASWVTAICLAMAIESLWLSWRTKMPVITAWSTPGLALMAAS
SGFSIGEAVAAFIVTAILLIATGLFRPLTQLISRIPPSVASGMLAGIVVTFALNAVKTVPVDPWLILPLIAAFFLIRVFH
PALSVLAVLVGGGLAAFLTGRVGGLPTPELSTLTLIAPDFTAKAMIGLALPLYLVTMASQNLSGLAVLRAAGYHPEPGPL
IGVTGLFSLLSAPFGGSTTNLAAISAAICTGPDVHPDPAERWKTGPFYALAYVIFAIFGASLVAIFAVLPQSLIVLVAGL
ALMASLANALAIALKDEGDRMAAIVTFVVTASGLTLFGVGAAFWGLIAGLVVLFLDRLKKR

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=390, Percent_Identity=40.2564102564103, Blast_Score=242, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 39253; Mature: 39122

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMRLSIPISAFVAAIVGFGGTLAIVIAAAHAVGATQIQTASWVTAICLAMAIESLWLSW
CCEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RTKMPVITAWSTPGLALMAASSGFSIGEAVAAFIVTAILLIATGLFRPLTQLISRIPPSV
HCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ASGMLAGIVVTFALNAVKTVPVDPWLILPLIAAFFLIRVFHPALSVLAVLVGGGLAAFLT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
GRVGGLPTPELSTLTLIAPDFTAKAMIGLALPLYLVTMASQNLSGLAVLRAAGYHPEPGP
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
LIGVTGLFSLLSAPFGGSTTNLAAISAAICTGPDVHPDPAERWKTGPFYALAYVIFAIFG
EEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
ASLVAIFAVLPQSLIVLVAGLALMASLANALAIALKDEGDRMAAIVTFVVTASGLTLFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHH
GAAFWGLIAGLVVLFLDRLKKR
HHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TMRLSIPISAFVAAIVGFGGTLAIVIAAAHAVGATQIQTASWVTAICLAMAIESLWLSW
CEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
RTKMPVITAWSTPGLALMAASSGFSIGEAVAAFIVTAILLIATGLFRPLTQLISRIPPSV
HCCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
ASGMLAGIVVTFALNAVKTVPVDPWLILPLIAAFFLIRVFHPALSVLAVLVGGGLAAFLT
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
GRVGGLPTPELSTLTLIAPDFTAKAMIGLALPLYLVTMASQNLSGLAVLRAAGYHPEPGP
CCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCC
LIGVTGLFSLLSAPFGGSTTNLAAISAAICTGPDVHPDPAERWKTGPFYALAYVIFAIFG
EEEHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
ASLVAIFAVLPQSLIVLVAGLALMASLANALAIALKDEGDRMAAIVTFVVTASGLTLFGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHCCHHHHHH
GAAFWGLIAGLVVLFLDRLKKR
HHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]