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The map label for this gene is ureD

Identifier: 13474135

GI number: 13474135

Start: 3924291

End: 3925133

Strand: Reverse

Name: ureD

Synonym: mll4949

Alternate gene names: 13474135

Gene position: 3925133-3924291 (Counterclockwise)

Preceding gene: 13474139

Following gene: 13474134

Centisome position: 55.79

GC content: 68.33

Gene sequence:

>843_bases
GTGGATACGATCGAATATACCGAGTTTTCGCCCCCTTTGGCCCAGCGCGCCGCGGGTCTGGCCCAGCTGGGCTGCGCCAG
CGCGGACGGGCGCACGCGGCTGCGGCGCCTTTATCAGGACGGTTCCGCCAAGATAAGGCTGCCGGCCGTTTTGGCCGACC
CGCTGGAGGCAGTGCTGATCAACACCGCCGGCGGACTGACCGGCGGCGACCGCATCGGTTGGGATGTGGATGTCGGCACA
GAAGCCTCGGCATCGATAACGACCCAGGCCTGCGAGAAGGTCTACCGCGCCGCATCCGACCAGGCCGAGGTGCGGGTCAA
GCTGACGGTCGGCGAGAACGGCCGCATCGCCTGGCTGCCGCAGGAGACCATCGTCTTCGACCGGGCGGCCTTTGCCCGCA
CATTGGATGTCGAGCTTGCCGCGGGGGCCGAGGCGCTGGTGCTGGAGGCCACCGTCTTCGGCCGCCTGGCCATGGGCGAA
CGCGCGTCGCAAGGCACTTTCCGTGACCGCTGGCGGGTTCGCCAGGACGGTTTCCTCATCCATGCCGAGGATTTCCGTAT
CGGACCCGATATCACTGGTGCCCTGGCACGCCCCGCGGCTGCCGGCGGCGTGATCGCCGTGGCGACGCTGCTGCTGGTGT
CGCCGCGGGCCGAGGCTCTGCTCGACCCGGTCCGGGAAATCGTCGGCCACCAGGGCGGCGCCAGCGTCTGGAGCGTGAAG
GCATCTGGCAAGCTTCTTGCGAGGCTTTACGCCGGGGACGGCTACCAACTGCGCCAGCGGCTGGTTCCGCTCGTCGGACT
GCTCAACGGAAGGGCGGGGCTGCCCAAATTATGGTCACTGTGA

Upstream 100 bases:

>100_bases
CGCCTGACCGTACCGAGGTGGCTCCCTCTATAGAAACGGAAACGCCATCAAGCAACAAGCTATATATCGACAAAACCGCC
GCAGTGCTTAACCTGACGGC

Downstream 100 bases:

>100_bases
TTCTGGAAACCGCATGAACCTGACCCCGAGGGAAAAAGACAAGCTGCTGATCGCCATGGCGGCGATCGTGGCACGCAAGC
GGCTGGAGCGCGGCGTCAAG

Product: urease accessory protein D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 280

Protein sequence:

>280_residues
MDTIEYTEFSPPLAQRAAGLAQLGCASADGRTRLRRLYQDGSAKIRLPAVLADPLEAVLINTAGGLTGGDRIGWDVDVGT
EASASITTQACEKVYRAASDQAEVRVKLTVGENGRIAWLPQETIVFDRAAFARTLDVELAAGAEALVLEATVFGRLAMGE
RASQGTFRDRWRVRQDGFLIHAEDFRIGPDITGALARPAAAGGVIAVATLLLVSPRAEALLDPVREIVGHQGGASVWSVK
ASGKLLARLYAGDGYQLRQRLVPLVGLLNGRAGLPKLWSL

Sequences:

>Translated_280_residues
MDTIEYTEFSPPLAQRAAGLAQLGCASADGRTRLRRLYQDGSAKIRLPAVLADPLEAVLINTAGGLTGGDRIGWDVDVGT
EASASITTQACEKVYRAASDQAEVRVKLTVGENGRIAWLPQETIVFDRAAFARTLDVELAAGAEALVLEATVFGRLAMGE
RASQGTFRDRWRVRQDGFLIHAEDFRIGPDITGALARPAAAGGVIAVATLLLVSPRAEALLDPVREIVGHQGGASVWSVK
ASGKLLARLYAGDGYQLRQRLVPLVGLLNGRAGLPKLWSL
>Mature_280_residues
MDTIEYTEFSPPLAQRAAGLAQLGCASADGRTRLRRLYQDGSAKIRLPAVLADPLEAVLINTAGGLTGGDRIGWDVDVGT
EASASITTQACEKVYRAASDQAEVRVKLTVGENGRIAWLPQETIVFDRAAFARTLDVELAAGAEALVLEATVFGRLAMGE
RASQGTFRDRWRVRQDGFLIHAEDFRIGPDITGALARPAAAGGVIAVATLLLVSPRAEALLDPVREIVGHQGGASVWSVK
ASGKLLARLYAGDGYQLRQRLVPLVGLLNGRAGLPKLWSL

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_RHILO (Q98CY2)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_105703.1
- GeneID:   1228364
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mll4949
- NMPDR:   fig|266835.1.peg.3807
- HOGENOM:   HBG711156
- OMA:   QETILFD
- ProtClustDB:   CLSK864153
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 29795; Mature: 29795

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIEYTEFSPPLAQRAAGLAQLGCASADGRTRLRRLYQDGSAKIRLPAVLADPLEAVLI
CCCCCCCCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCHHEEEE
NTAGGLTGGDRIGWDVDVGTEASASITTQACEKVYRAASDQAEVRVKLTVGENGRIAWLP
ECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEC
QETIVFDRAAFARTLDVELAAGAEALVLEATVFGRLAMGERASQGTFRDRWRVRQDGFLI
CHHHEEHHHHHHHEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHEECCCCEEE
HAEDFRIGPDITGALARPAAAGGVIAVATLLLVSPRAEALLDPVREIVGHQGGASVWSVK
EECCCEECCCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEE
ASGKLLARLYAGDGYQLRQRLVPLVGLLNGRAGLPKLWSL
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure
MDTIEYTEFSPPLAQRAAGLAQLGCASADGRTRLRRLYQDGSAKIRLPAVLADPLEAVLI
CCCCCCCCCCCCHHHHHCCHHHHCCCCCCHHHHHHHHHHCCCCEEEECHHHHCCHHEEEE
NTAGGLTGGDRIGWDVDVGTEASASITTQACEKVYRAASDQAEVRVKLTVGENGRIAWLP
ECCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEC
QETIVFDRAAFARTLDVELAAGAEALVLEATVFGRLAMGERASQGTFRDRWRVRQDGFLI
CHHHEEHHHHHHHEEEEEECCCCCEEEEEHHHHHHHHCCCCCCCCCHHHHHEECCCCEEE
HAEDFRIGPDITGALARPAAAGGVIAVATLLLVSPRAEALLDPVREIVGHQGGASVWSVK
EECCCEECCCCCHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEE
ASGKLLARLYAGDGYQLRQRLVPLVGLLNGRAGLPKLWSL
CCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968