| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is yhcW [H]
Identifier: 13474120
GI number: 13474120
Start: 3914722
End: 3915354
Strand: Direct
Name: yhcW [H]
Synonym: mlr4932
Alternate gene names: 13474120
Gene position: 3914722-3915354 (Clockwise)
Preceding gene: 13474118
Following gene: 13474129
Centisome position: 55.64
GC content: 63.67
Gene sequence:
>633_bases ATGACACCGAAGGCGGTTTTCTGGGACATGGACGGTACGCTGGTCGACAGCGAGCCGTTGCACGAAGCAGCCCTCGTGGC GGCGATGCGCAATGTCGGCCTCAAGCCGCCCGCCGACCTGCATGAGCGCGTGCTCGGCGTCGCCGCCTGGCCGGTCTACG AAATGATGCGCGACGAGTTCGGCCTCGATCTTCCCTTCGACGACTGGATCATGCGCAAATACGAGCACTATCTGCCGCTG GTGGAGGGGCTGAAACCGCGTCCTGGCGCTATAGAAGTCTTCAATGAATTGCGCGCGCTTGGCGTGCAGCAAGCGGTGGT CTCGAATTCAGACCGGATGATCGTCGACGCCAATCTGCGCATGGTCGGCCTCTTTTATCCAGGCATGAAAACGATCAGCC GCAACGACGTGCGTGATGGCAAGCCGCACGCCGAACCTTTCCTGCGCGCCGCGTACCTGGCCGATGTCGATCCCGCGCAC GCCGTGGCGGTCGACGACAGCTGGCCGGGCGCCATGGCGGGTCTGGCGGCGGGCATGAAGACGATCTTCTGGCCGGAAAA GCCGATGGAAGGCCCGCCTGGCGCCATCGTCATCAACAGCGCCGAGGAATTGCGGGCTCAGCTCGGGCTCTAA
Upstream 100 bases:
>100_bases AGGCGGAGCGGCTTCGCTTCCAGTCGCGGGCATCTTCTGTGATCCCGACGGTTTATCTCCCGGCGCAAACCCTTTAAGGG GATCGCAAAAGGAGCGCTGC
Downstream 100 bases:
>100_bases TTCCGGTAGATCGGCTCTTCCTCGTCGAGGATCGCCTTCAACTCGGCGAGATGGCGTTCGGCCTGGCCGGGATAGTCGTC CATTTCGCTCGCCGTCTTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 210; Mature: 209
Protein sequence:
>210_residues MTPKAVFWDMDGTLVDSEPLHEAALVAAMRNVGLKPPADLHERVLGVAAWPVYEMMRDEFGLDLPFDDWIMRKYEHYLPL VEGLKPRPGAIEVFNELRALGVQQAVVSNSDRMIVDANLRMVGLFYPGMKTISRNDVRDGKPHAEPFLRAAYLADVDPAH AVAVDDSWPGAMAGLAAGMKTIFWPEKPMEGPPGAIVINSAEELRAQLGL
Sequences:
>Translated_210_residues MTPKAVFWDMDGTLVDSEPLHEAALVAAMRNVGLKPPADLHERVLGVAAWPVYEMMRDEFGLDLPFDDWIMRKYEHYLPL VEGLKPRPGAIEVFNELRALGVQQAVVSNSDRMIVDANLRMVGLFYPGMKTISRNDVRDGKPHAEPFLRAAYLADVDPAH AVAVDDSWPGAMAGLAAGMKTIFWPEKPMEGPPGAIVINSAEELRAQLGL >Mature_209_residues TPKAVFWDMDGTLVDSEPLHEAALVAAMRNVGLKPPADLHERVLGVAAWPVYEMMRDEFGLDLPFDDWIMRKYEHYLPLV EGLKPRPGAIEVFNELRALGVQQAVVSNSDRMIVDANLRMVGLFYPGMKTISRNDVRDGKPHAEPFLRAAYLADVDPAHA VAVDDSWPGAMAGLAAGMKTIFWPEKPMEGPPGAIVINSAEELRAQLGL
Specific function: Unknown
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI1790151, Length=198, Percent_Identity=28.2828282828283, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082080, Length=188, Percent_Identity=30.3191489361702, Blast_Score=61, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006439 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: NA
Molecular weight: Translated: 23161; Mature: 23030
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.7 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPKAVFWDMDGTLVDSEPLHEAALVAAMRNVGLKPPADLHERVLGVAAWPVYEMMRDEF CCCCEEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GLDLPFDDWIMRKYEHYLPLVEGLKPRPGAIEVFNELRALGVQQAVVSNSDRMIVDANLR CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE MVGLFYPGMKTISRNDVRDGKPHAEPFLRAAYLADVDPAHAVAVDDSWPGAMAGLAAGMK EEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH TIFWPEKPMEGPPGAIVINSAEELRAQLGL HHCCCCCCCCCCCCEEEECCHHHHHHHHCC >Mature Secondary Structure TPKAVFWDMDGTLVDSEPLHEAALVAAMRNVGLKPPADLHERVLGVAAWPVYEMMRDEF CCCEEEECCCCEEECCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHC GLDLPFDDWIMRKYEHYLPLVEGLKPRPGAIEVFNELRALGVQQAVVSNSDRMIVDANLR CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCE MVGLFYPGMKTISRNDVRDGKPHAEPFLRAAYLADVDPAHAVAVDDSWPGAMAGLAAGMK EEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHH TIFWPEKPMEGPPGAIVINSAEELRAQLGL HHCCCCCCCCCCCCEEEECCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969498; 9384377 [H]