Click here to switch to the map view.

The map label for this gene is ygiV [H]

Identifier: 13474099

GI number: 13474099

Start: 3892625

End: 3893476

Strand: Reverse

Name: ygiV [H]

Synonym: mll4902

Alternate gene names: 13474099

Gene position: 3893476-3892625 (Counterclockwise)

Preceding gene: 13474102

Following gene: 13474094

Centisome position: 55.34

GC content: 62.79

Gene sequence:

>852_bases
ATGCAGCGGGTGCTGGACCACATAGACCAGCATCTGGACGACGATCTGGGCCTGGAGGCATTGAGCAGCGTCGCGGCGTT
CTCGAAATTCCATTTCCACCGGCAGTTCATGGCCACCTTCGGTCTGTCCGTGCACCGCTACGTCCAACTCGCCCGCATGA
AGCGCGCTTCGCAAAGGCTTGCGGCGAGCGACGCCCAAAGCGTCACCGATATAGCGATGGATGCAGGTTACGACGCACCG
GATGCCTTCGCCCGCGCCTTTCGGCAACGGTTCGGACAGTCGCCTTCGTCGTTCCGGAAATCCCCCGATTGGGGGGCGTG
GCTGATGGCCTTCGGGCCTTTCGACAAAGCAAGGAACACGCTTATGCAGATCATCTTCGACCAAGACGACGTGACGATCC
GCGATGTGCCGCCCACACCGGTGGCGATCATGGAGCATCGCGGAGACCGGGCGACACTCCAGGACACCATCCAGCGGTTC
ATCGCCTGGCGCAAGGCGGCGGGCTTGTCGCCCGAGACAAGCCCGACCTTCAACGTCTTCCGTTCCGAAAGGGAGCCGGC
GATCGCCGCCGACTACAGCATGGACATTTGTGTTGGGACCGATCAGCCGATCGACGAGAAAGACGGGCAGATGAAGGCCG
GCGTGATCCCCGGCGGACGCTGCGCAGTGCTGCGCTACCCCGGCAACACCAACAATCTCGAACCCGCGGCACTCTACCTC
TACCGTGAATGGCTTCCGGCCAGCGGCGAGGAAGTGCGCGACTTTCCAGTCTATTGCCAGCGCCGGCTGTCCCGCCTCGC
GGAAGGCCCGCTGCACGAAGTGCTCGTTGAGCTGTTCCTGCCTCTGAAATAG

Upstream 100 bases:

>100_bases
GCGCAAGATCGGTCGAGCGCGACATATCTGGGAGCGCCTATCTGGGGTCGCCACGGAGGAAGAGACGGTGAAGGCGTCAC
TTGAAAACTACCATGCCCGA

Downstream 100 bases:

>100_bases
CGCTTGGGGTGGCGGCGGACAGGCTGTTGTCCGCCCCACCTCCGTTATTGCTACAAGATCTAGCGGGCCGCCGCACGCTT
TTCGAGCGAACGCGCATATT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MQRVLDHIDQHLDDDLGLEALSSVAAFSKFHFHRQFMATFGLSVHRYVQLARMKRASQRLAASDAQSVTDIAMDAGYDAP
DAFARAFRQRFGQSPSSFRKSPDWGAWLMAFGPFDKARNTLMQIIFDQDDVTIRDVPPTPVAIMEHRGDRATLQDTIQRF
IAWRKAAGLSPETSPTFNVFRSEREPAIAADYSMDICVGTDQPIDEKDGQMKAGVIPGGRCAVLRYPGNTNNLEPAALYL
YREWLPASGEEVRDFPVYCQRRLSRLAEGPLHEVLVELFLPLK

Sequences:

>Translated_283_residues
MQRVLDHIDQHLDDDLGLEALSSVAAFSKFHFHRQFMATFGLSVHRYVQLARMKRASQRLAASDAQSVTDIAMDAGYDAP
DAFARAFRQRFGQSPSSFRKSPDWGAWLMAFGPFDKARNTLMQIIFDQDDVTIRDVPPTPVAIMEHRGDRATLQDTIQRF
IAWRKAAGLSPETSPTFNVFRSEREPAIAADYSMDICVGTDQPIDEKDGQMKAGVIPGGRCAVLRYPGNTNNLEPAALYL
YREWLPASGEEVRDFPVYCQRRLSRLAEGPLHEVLVELFLPLK
>Mature_283_residues
MQRVLDHIDQHLDDDLGLEALSSVAAFSKFHFHRQFMATFGLSVHRYVQLARMKRASQRLAASDAQSVTDIAMDAGYDAP
DAFARAFRQRFGQSPSSFRKSPDWGAWLMAFGPFDKARNTLMQIIFDQDDVTIRDVPPTPVAIMEHRGDRATLQDTIQRF
IAWRKAAGLSPETSPTFNVFRSEREPAIAADYSMDICVGTDQPIDEKDGQMKAGVIPGGRCAVLRYPGNTNNLEPAALYL
YREWLPASGEEVRDFPVYCQRRLSRLAEGPLHEVLVELFLPLK

Specific function: Represses expression of mcbR [H]

COG id: COG3449

COG function: function code L; DNA gyrase inhibitor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI48994918, Length=155, Percent_Identity=34.8387096774194, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790857, Length=291, Percent_Identity=24.0549828178694, Blast_Score=83, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind [H]

EC number: NA

Molecular weight: Translated: 31909; Mature: 31909

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRVLDHIDQHLDDDLGLEALSSVAAFSKFHFHRQFMATFGLSVHRYVQLARMKRASQRL
CCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AASDAQSVTDIAMDAGYDAPDAFARAFRQRFGQSPSSFRKSPDWGAWLMAFGPFDKARNT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEECCHHHHHHH
LMQIIFDQDDVTIRDVPPTPVAIMEHRGDRATLQDTIQRFIAWRKAAGLSPETSPTFNVF
HHHHHCCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
RSEREPAIAADYSMDICVGTDQPIDEKDGQMKAGVIPGGRCAVLRYPGNTNNLEPAALYL
HCCCCCCEEECCCEEEEECCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHHHHH
YREWLPASGEEVRDFPVYCQRRLSRLAEGPLHEVLVELFLPLK
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MQRVLDHIDQHLDDDLGLEALSSVAAFSKFHFHRQFMATFGLSVHRYVQLARMKRASQRL
CCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
AASDAQSVTDIAMDAGYDAPDAFARAFRQRFGQSPSSFRKSPDWGAWLMAFGPFDKARNT
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHCCCCCCCEEEEEECCHHHHHHH
LMQIIFDQDDVTIRDVPPTPVAIMEHRGDRATLQDTIQRFIAWRKAAGLSPETSPTFNVF
HHHHHCCCCCEEEECCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
RSEREPAIAADYSMDICVGTDQPIDEKDGQMKAGVIPGGRCAVLRYPGNTNNLEPAALYL
HCCCCCCEEECCCEEEEECCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCHHHHHH
YREWLPASGEEVRDFPVYCQRRLSRLAEGPLHEVLVELFLPLK
HHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]