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The map label for this gene is rnpA

Identifier: 13474028

GI number: 13474028

Start: 3825400

End: 3825732

Strand: Direct

Name: rnpA

Synonym: mlr4810

Alternate gene names: 13474028

Gene position: 3825400-3825732 (Clockwise)

Preceding gene: 13474027

Following gene: 13474029

Centisome position: 54.37

GC content: 63.66

Gene sequence:

>333_bases
GTGGGGCAAAATCCCAAGCGGCTTCTGAAACGCGCGGAATTCCTGGCCGTCCGTCGTGGTGAAAAGCGACGCGGACGGTT
TTTCCTTGTCGAGGTCCTCGACCGCGGCGATGGCGGGGTGCCGCGCGTCGGCTACACCGTCACCAAGAAGGTCGGCAACG
CTGTTGTGCGCAACCGCGTCAGGCGGCGGCTGAAAGAAGCCGTCCGCGTCCATGCTGCAGATGACATGGTGCCCGGCAAT
GATTATGTCATCGTCGGGCGCGATGATGCGCTGCGCGCCCCCTTCGGCCAGTTGAAGGCCGAACTCTCCCGCCGATTTCG
CGGAACACGATAG

Upstream 100 bases:

>100_bases
CCAAGGGTGGTCGTGGCGTCGTCGCAGCTCGCCGCAACCGCGGCCGCAAGCGGCTTAGCGCCTAAGCGAGACGATATCGT
TGCCCGCAACCGGCAAGCCA

Downstream 100 bases:

>100_bases
GCCAAGGGCTCTCGATGGAAAACAACCGGAACTTCTTCATCACCATCGCGCTGTCGGTGCTGATCCTGGCGGTATGGCAA
TATTTTTATGTCTTGCCGCG

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MGQNPKRLLKRAEFLAVRRGEKRRGRFFLVEVLDRGDGGVPRVGYTVTKKVGNAVVRNRVRRRLKEAVRVHAADDMVPGN
DYVIVGRDDALRAPFGQLKAELSRRFRGTR

Sequences:

>Translated_110_residues
MGQNPKRLLKRAEFLAVRRGEKRRGRFFLVEVLDRGDGGVPRVGYTVTKKVGNAVVRNRVRRRLKEAVRVHAADDMVPGN
DYVIVGRDDALRAPFGQLKAELSRRFRGTR
>Mature_109_residues
GQNPKRLLKRAEFLAVRRGEKRRGRFFLVEVLDRGDGGVPRVGYTVTKKVGNAVVRNRVRRRLKEAVRVHAADDMVPGND
YVIVGRDDALRAPFGQLKAELSRRFRGTR

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNPA_RHILO (Q98D89)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_105596.1
- ProteinModelPortal:   Q98D89
- SMR:   Q98D89
- GeneID:   1228257
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr4810
- NMPDR:   fig|266835.1.peg.3700
- HOGENOM:   HBG728160
- OMA:   HDYVIVA
- ProtClustDB:   PRK01313
- BRENDA:   3.1.26.5
- HAMAP:   MF_00227
- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- InterPro:   IPR020539
- Gene3D:   G3DSA:3.30.230.10
- ProDom:   PD003629
- TIGRFAMs:   TIGR00188

Pfam domain/function: PF00825 Ribonuclease_P; SSF54211 Ribosomal_S5_D2-typ_fold

EC number: =3.1.26.5

Molecular weight: Translated: 12543; Mature: 12412

Theoretical pI: Translated: 12.14; Mature: 12.14

Prosite motif: PS00648 RIBONUCLEASE_P

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQNPKRLLKRAEFLAVRRGEKRRGRFFLVEVLDRGDGGVPRVGYTVTKKVGNAVVRNRV
CCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
RRRLKEAVRVHAADDMVPGNDYVIVGRDDALRAPFGQLKAELSRRFRGTR
HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GQNPKRLLKRAEFLAVRRGEKRRGRFFLVEVLDRGDGGVPRVGYTVTKKVGNAVVRNRV
CCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
RRRLKEAVRVHAADDMVPGNDYVIVGRDDALRAPFGQLKAELSRRFRGTR
HHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968