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The map label for this gene is yvoA [H]

Identifier: 13473996

GI number: 13473996

Start: 3790266

End: 3791048

Strand: Reverse

Name: yvoA [H]

Synonym: mll4768

Alternate gene names: 13473996

Gene position: 3791048-3790266 (Counterclockwise)

Preceding gene: 13473997

Following gene: 13473995

Centisome position: 53.88

GC content: 67.82

Gene sequence:

>783_bases
ATGAATGACGCCGCCGACCAGATCTTTGCCACGCTGAAGCAGTCCGCGCAAAGCGGCGCGCCGCTCTATCTGCAGCTGCG
CAAAAGCATCGAGGACGCCGTCAATCGCGGCCTGATCGGCCCGGGCGACGCGCTGCCTTCCGAACGCGACATCGCCACCA
AGGCCGACATTTCGCGCGTCACCGTGCGCAAGGCGGTGCAGGATCTGGTCAAGGGCGGCATCCTCGTGCAGCGCCACGGC
TCCGGCACTTTCGTGGCGCCGCGCATGGAGCGCGTCGAGCAATCGCTGTCGCGGCTGACCTCGTTTACCGAAGACATGGC
GCGGCGCGGCATGGCGGTGCGTTCGGCATGGCTGGACCGCGGCCTCTACGCGCCCTCGCCCGACGAGATGATGGTGCTTG
GCCTGTCGTCGAGCGAACTGGTGGCGCGCGTGGCGCGTCTGCGCATCGCCAACGACACGCCACTGGCGATCGAACGCGCC
TCGCTGTCGGCCAGCGTGCTGCCCGACCCGGCCGGGATCGGCTCCTCGCTCTATGCCGCGCTGGAATTGACCGGAAACCG
GCCGGTGCGGGCGGTGCAGCGCATCTCGGCCGCCAATCTCGGCGACAGCGATGCGCGCCTGCTCGAAGTGCCGCCGGGTA
TCGCCGGCCTGCATATCGAACGCATCTCCTATCTGGCGAGCGGCAAGGTGATCGAATTCACCCGCTCCATCTACCGGGGC
GACGCCTATGATTTCGTCGCCGAACTGCGGCTGACAGGGCCGAGCGAAGAGGGCCGACCATGA

Upstream 100 bases:

>100_bases
CGCGCTACCGGGCACTGCTCAAGCCGCCGCTCGACGATGCGCTGGGCGGCGCGGTGCAGATGGCGGTCCGGCTTTTCGCC
AGACCGGTGGAGGCGGCGCG

Downstream 100 bases:

>100_bases
TCTCCAACACCACCCATATGCAACGCGAGATCGAGGAGATCCCGAAGGCCGTCGCCCGCCTGCTCGACGGCTCCGGCGCC
GCGCTCGCCGAGGCCGGGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MNDAADQIFATLKQSAQSGAPLYLQLRKSIEDAVNRGLIGPGDALPSERDIATKADISRVTVRKAVQDLVKGGILVQRHG
SGTFVAPRMERVEQSLSRLTSFTEDMARRGMAVRSAWLDRGLYAPSPDEMMVLGLSSSELVARVARLRIANDTPLAIERA
SLSASVLPDPAGIGSSLYAALELTGNRPVRAVQRISAANLGDSDARLLEVPPGIAGLHIERISYLASGKVIEFTRSIYRG
DAYDFVAELRLTGPSEEGRP

Sequences:

>Translated_260_residues
MNDAADQIFATLKQSAQSGAPLYLQLRKSIEDAVNRGLIGPGDALPSERDIATKADISRVTVRKAVQDLVKGGILVQRHG
SGTFVAPRMERVEQSLSRLTSFTEDMARRGMAVRSAWLDRGLYAPSPDEMMVLGLSSSELVARVARLRIANDTPLAIERA
SLSASVLPDPAGIGSSLYAALELTGNRPVRAVQRISAANLGDSDARLLEVPPGIAGLHIERISYLASGKVIEFTRSIYRG
DAYDFVAELRLTGPSEEGRP
>Mature_260_residues
MNDAADQIFATLKQSAQSGAPLYLQLRKSIEDAVNRGLIGPGDALPSERDIATKADISRVTVRKAVQDLVKGGILVQRHG
SGTFVAPRMERVEQSLSRLTSFTEDMARRGMAVRSAWLDRGLYAPSPDEMMVLGLSSSELVARVARLRIANDTPLAIERA
SLSASVLPDPAGIGSSLYAALELTGNRPVRAVQRISAANLGDSDARLLEVPPGIAGLHIERISYLASGKVIEFTRSIYRG
DAYDFVAELRLTGPSEEGRP

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=32.4675324675325, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1788418, Length=252, Percent_Identity=28.1746031746032, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI87082252, Length=226, Percent_Identity=26.9911504424779, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 27968; Mature: 27968

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDAADQIFATLKQSAQSGAPLYLQLRKSIEDAVNRGLIGPGDALPSERDIATKADISRV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
TVRKAVQDLVKGGILVQRHGSGTFVAPRMERVEQSLSRLTSFTEDMARRGMAVRSAWLDR
HHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GLYAPSPDEMMVLGLSSSELVARVARLRIANDTPLAIERASLSASVLPDPAGIGSSLYAA
CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHEEE
LELTGNRPVRAVQRISAANLGDSDARLLEVPPGIAGLHIERISYLASGKVIEFTRSIYRG
EEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
DAYDFVAELRLTGPSEEGRP
CHHHHHHHHEECCCCCCCCC
>Mature Secondary Structure
MNDAADQIFATLKQSAQSGAPLYLQLRKSIEDAVNRGLIGPGDALPSERDIATKADISRV
CCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
TVRKAVQDLVKGGILVQRHGSGTFVAPRMERVEQSLSRLTSFTEDMARRGMAVRSAWLDR
HHHHHHHHHHHCCEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHC
GLYAPSPDEMMVLGLSSSELVARVARLRIANDTPLAIERASLSASVLPDPAGIGSSLYAA
CCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCHHHEEE
LELTGNRPVRAVQRISAANLGDSDARLLEVPPGIAGLHIERISYLASGKVIEFTRSIYRG
EEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHCC
DAYDFVAELRLTGPSEEGRP
CHHHHHHHHEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]