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The map label for this gene is 13473944

Identifier: 13473944

GI number: 13473944

Start: 3734187

End: 3734645

Strand: Reverse

Name: 13473944

Synonym: mll4705

Alternate gene names: NA

Gene position: 3734645-3734187 (Counterclockwise)

Preceding gene: 13473946

Following gene: 13473943

Centisome position: 53.08

GC content: 61.0

Gene sequence:

>459_bases
GTGCTCGACGAAGCCGGCCTGTCGGATTTTGGCGAGCTGCGCCAGGCCATCACGCGCCGGCAGCATGATCTCTATTTCGT
CGCTTTTGATCTCCTGCATCTCAATGGCCATGATCTGCGCGACATGACACTTGAAGAGCGGCGTGAGATCCTGTCCAGCA
TGATCGAGCCGGGCGGGCGCATCCAGTTCAGCGAGCCGCTGCCGGGCGAAGCCAATGCGATTTACCATCTGTTCGACCAG
GCCGGACTCGAGGGCATGGTGTCGAAGCGCCGCGACAGCAAATACCGCAGCGGCCCCTCGACGAACTGGCTGAAGACCAA
ATGTTATGCGATCGACGAATACGAGCTGCTCGGCGTCGAGCGCGAGGCAGGCAAGCCGGCCTTCGCTCTCATGGCCGATT
CGGGCGACCGGCAAGTATGTCGGCTCGGCCTTTATCAATTCCAGGCGTGCAATCCGTGA

Upstream 100 bases:

>100_bases
CACGCGCAATGGCCACGACTGGACGGCGAAGTATCGCGACCTGGTAAAGGAAGCCGCCAGCCTCGGCGCGGAAAGCGCCA
TTGTCGACGGCGAGATCATC

Downstream 100 bases:

>100_bases
GCGCCTCTGGGCGCGTGTGCAAGAGCTGCGGGGCCGGCGCCGAAGGGGATGAAACGGCCGGCGACGCGGTGGGTCAAGCC
GGGTCTCATCGGCCGCGTGA

Product: DNA ligase

Products: NA

Alternate protein names: DNA Ligase D; ATP Dependent DNA Ligase; DNA Polymerase LigD Ligase Domain Protein; DNA Ligase; ATP-Dependent DNA Ligase Protein; DNA Ligase Protein; ATP-Dependent DNA Ligase Family Protein; DNA Polymerase LigD Ligase Region; DNA Polymerase LigD Ligase Subunit; Ligase; DNA Ligase-Like Protein; DNA Ligase Family Protein; DNA Primase Small Subunit; DNA Ligase ATP-Dependent

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLDEAGLSDFGELRQAITRRQHDLYFVAFDLLHLNGHDLRDMTLEERREILSSMIEPGGRIQFSEPLPGEANAIYHLFDQ
AGLEGMVSKRRDSKYRSGPSTNWLKTKCYAIDEYELLGVEREAGKPAFALMADSGDRQVCRLGLYQFQACNP

Sequences:

>Translated_152_residues
MLDEAGLSDFGELRQAITRRQHDLYFVAFDLLHLNGHDLRDMTLEERREILSSMIEPGGRIQFSEPLPGEANAIYHLFDQ
AGLEGMVSKRRDSKYRSGPSTNWLKTKCYAIDEYELLGVEREAGKPAFALMADSGDRQVCRLGLYQFQACNP
>Mature_152_residues
MLDEAGLSDFGELRQAITRRQHDLYFVAFDLLHLNGHDLRDMTLEERREILSSMIEPGGRIQFSEPLPGEANAIYHLFDQ
AGLEGMVSKRRDSKYRSGPSTNWLKTKCYAIDEYELLGVEREAGKPAFALMADSGDRQVCRLGLYQFQACNP

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17288; Mature: 17288

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS50160 DNA_LIGASE_A3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDEAGLSDFGELRQAITRRQHDLYFVAFDLLHLNGHDLRDMTLEERREILSSMIEPGGR
CCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEHHCCCCCCHHCCHHHHHHHHHHHHCCCCC
IQFSEPLPGEANAIYHLFDQAGLEGMVSKRRDSKYRSGPSTNWLKTKCYAIDEYELLGVE
EEECCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHEECCC
REAGKPAFALMADSGDRQVCRLGLYQFQACNP
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MLDEAGLSDFGELRQAITRRQHDLYFVAFDLLHLNGHDLRDMTLEERREILSSMIEPGGR
CCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEHHCCCCCCHHCCHHHHHHHHHHHHCCCCC
IQFSEPLPGEANAIYHLFDQAGLEGMVSKRRDSKYRSGPSTNWLKTKCYAIDEYELLGVE
EEECCCCCCCCHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCHHEECCC
REAGKPAFALMADSGDRQVCRLGLYQFQACNP
CCCCCCEEEEEECCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA