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The map label for this gene is atpD [H]

Identifier: 13473456

GI number: 13473456

Start: 3245449

End: 3246882

Strand: Reverse

Name: atpD [H]

Synonym: mll4060

Alternate gene names: 13473456

Gene position: 3246882-3245449 (Counterclockwise)

Preceding gene: 13473457

Following gene: 13473455

Centisome position: 46.15

GC content: 65.48

Gene sequence:

>1434_bases
GTGGCCGCCAAGGCAACCGGCGTTGTCGGCAAGGTCCGCCAGGTCATCGGCGCAGTCGTCGACGTGCAGTTCGGCGATCA
CCTTCCGGCGATCCTGAACGCGCTCGAGACGACCAATGTCGGCAATCGCCTGGTGCTTGAAGTTGCCCAGCATCTGGGTG
AAAACACCGTGCGCTGCATCGCCATGGACTCCACCGAAGGTCTGGTGCGCGGCCAGGAAGTGCGTGACACCGGTGCGCCG
ATCACCGTACCGGTCGGCCCGGGCATGCTGGGCCGCATCATCAACGTCATCGGCGAGCCGGTCGACGAAGAGGGCCCGGT
CGATGCGATCGAGATGCGCTCCATCCACCAGCCGGCTCCGACCTATGTCGAGCAGTCGACGGAAGCGCAGATCCTGATCA
CCGGCATCAAGGTGCTCGACCTGCTGGCGCCTTACGCCAAGGGCGGCAAGATCGGCCTGTTCGGCGGCGCCGGCGTCGGC
AAGACCGTGCTGATCCAGGAACTGATCAACAACATCGCCAAGGCACACGGCGGCTATTCGGTGTTCGCCGGCGTCGGTGA
GCGCACCCGCGAGGGCAACGATCTCTATCACGAGTTCATCGAATCCGGCGTCAACAAGAAGGGCGGCGGCGAAGGCTCCA
AGGCGGCTCTCGTGTACGGCCAGATGAACGAGCCGCCGGGCGCGCGCGCCCGTGTCGGCCTGACCGGCCTGACGGTGGCT
GAATATTTCCGCGACCAGGGCCAGGACGTGCTGTTCTTCGTCGACAACATCTTCCGCTTCACGCAGGCGGGTTCGGAAGT
GTCGGCTCTGCTCGGCCGTATCCCGTCGGCCGTGGGCTATCAGCCGACGCTCGCCACCGACATGGGCGCGCTGCAGGAAC
GCATCACCACCACCACCAAGGGCTCGATCACCTCGGTGCAGGCCATCTACGTGCCCGCCGACGACTTGACCGACCCGGCG
CCGGCGACCTCGTTCGCCCACCTTGACGCGACGACGACGCTGAACCGCGCCATCGCCGAAAAGGGCATCTATCCGGCGGT
CGATCCGCTGGATTCGACCTCGCGCATGCTCGACCCGATGGTTGTCGGCGAAGAGCACTATGCGGTTGCCCGCCAGGTGC
AGTCGATCCTCCAGCGCTACAAGTCGCTGCAGGACATCATCGCCATCCTGGGCATGGACGAGCTGTCGGAAGAGGACAAG
CAGACCGTGGCCCGCGCCCGCAAGATCGAGCGCTTCCTGTCGCAGCCCTTCTTCGTCGCCGAAGTGTTCACCGGCGCGCC
GGGCAAGCTCGTCGACCTCGCCGACACCATCAAGGGCTTCAAGGGCCTCTGCAACGGCGACTACGATCACCTGCCGGAAG
CTGCCTTCTACATGGTCGGCGGCATCGAGGAAGCGGTCGAGAAGGCACAGCGCCTGGCGGCTGAAGCGGCATAA

Upstream 100 bases:

>100_bases
CCCCGTAAAGGCGGCCAAGGCTCCGGCAGCCGCCGCGAAGGCAGCTCCGGCAAAGACGGCGGCAGCGCCGGCCAAGGCCG
CGGCGGCCAAGACTTCGGCC

Downstream 100 bases:

>100_bases
GAAGCGAATAGCGAATAGGGAGTAGCGAATAGGGCAAGGTGAGCCAAGCGAGTTTCTTCCCTACTCGCTACTCACTATTC
CCTACTCGCTAGAGTGATCA

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 477; Mature: 476

Protein sequence:

>477_residues
MAAKATGVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAP
ITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVG
KTVLIQELINNIAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKAALVYGQMNEPPGARARVGLTGLTVA
EYFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPA
PATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDK
QTVARARKIERFLSQPFFVAEVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEAA

Sequences:

>Translated_477_residues
MAAKATGVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAP
ITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVG
KTVLIQELINNIAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKAALVYGQMNEPPGARARVGLTGLTVA
EYFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPA
PATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDK
QTVARARKIERFLSQPFFVAEVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEAA
>Mature_476_residues
AAKATGVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCIAMDSTEGLVRGQEVRDTGAPI
TVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAPTYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGK
TVLIQELINNIAKAHGGYSVFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKAALVYGQMNEPPGARARVGLTGLTVAE
YFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTKGSITSVQAIYVPADDLTDPAP
ATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPMVVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDKQ
TVARARKIERFLSQPFFVAEVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEAA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=474, Percent_Identity=78.4810126582278, Blast_Score=731, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=302, Percent_Identity=29.4701986754967, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI19913428, Length=369, Percent_Identity=26.2872628726287, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI19913426, Length=368, Percent_Identity=25.8152173913043, Blast_Score=98, Evalue=2e-20,
Organism=Homo sapiens, GI50345984, Length=297, Percent_Identity=25.2525252525253, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI4757810, Length=297, Percent_Identity=25.2525252525253, Blast_Score=92, Evalue=1e-18,
Organism=Escherichia coli, GI1790170, Length=464, Percent_Identity=69.8275862068966, Blast_Score=647, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=362, Percent_Identity=29.0055248618785, Blast_Score=139, Evalue=5e-34,
Organism=Escherichia coli, GI1790172, Length=443, Percent_Identity=25.5079006772009, Blast_Score=115, Evalue=8e-27,
Organism=Caenorhabditis elegans, GI25144756, Length=474, Percent_Identity=75.1054852320675, Blast_Score=716, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=324, Percent_Identity=29.0123456790123, Blast_Score=129, Evalue=4e-30,
Organism=Caenorhabditis elegans, GI17570191, Length=358, Percent_Identity=26.2569832402235, Blast_Score=104, Evalue=8e-23,
Organism=Caenorhabditis elegans, GI17510931, Length=358, Percent_Identity=26.2569832402235, Blast_Score=104, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI71988080, Length=320, Percent_Identity=23.75, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=320, Percent_Identity=23.75, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=272, Percent_Identity=22.4264705882353, Blast_Score=68, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6322581, Length=467, Percent_Identity=75.3747323340471, Blast_Score=698, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319370, Length=371, Percent_Identity=26.1455525606469, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6319603, Length=375, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=6e-24,
Organism=Saccharomyces cerevisiae, GI6320016, Length=250, Percent_Identity=27.6, Blast_Score=87, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24638766, Length=469, Percent_Identity=79.9573560767591, Blast_Score=741, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=474, Percent_Identity=70.042194092827, Blast_Score=655, Evalue=0.0,
Organism=Drosophila melanogaster, GI24638768, Length=90, Percent_Identity=75.5555555555556, Blast_Score=130, Evalue=1e-30,
Organism=Drosophila melanogaster, GI24583988, Length=321, Percent_Identity=29.595015576324, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24583986, Length=321, Percent_Identity=29.595015576324, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24583984, Length=321, Percent_Identity=29.595015576324, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24583992, Length=324, Percent_Identity=28.3950617283951, Blast_Score=127, Evalue=2e-29,
Organism=Drosophila melanogaster, GI20129479, Length=312, Percent_Identity=29.4871794871795, Blast_Score=125, Evalue=5e-29,
Organism=Drosophila melanogaster, GI281361666, Length=367, Percent_Identity=26.4305177111717, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24646341, Length=367, Percent_Identity=26.4305177111717, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI17136796, Length=367, Percent_Identity=26.4305177111717, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24658560, Length=320, Percent_Identity=23.75, Blast_Score=90, Evalue=4e-18,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50776; Mature: 50645

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAKATGVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCI
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
AMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAP
EECCCCCHHCCCHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC
TYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKAHGGYS
HHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKAALVYGQMNEPPGARARVGLTGLTVA
EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCHHHHHH
EYFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTK
HHHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCC
GSITSVQAIYVPADDLTDPAPATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPM
CCCEEEEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH
VVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDKQTVARARKIERFLSQPFFVA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
EVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEAA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AAKATGVVGKVRQVIGAVVDVQFGDHLPAILNALETTNVGNRLVLEVAQHLGENTVRCI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEE
AMDSTEGLVRGQEVRDTGAPITVPVGPGMLGRIINVIGEPVDEEGPVDAIEMRSIHQPAP
EECCCCCHHCCCHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC
TYVEQSTEAQILITGIKVLDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKAHGGYS
HHHCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEE
VFAGVGERTREGNDLYHEFIESGVNKKGGGEGSKAALVYGQMNEPPGARARVGLTGLTVA
EEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEECCHHHHHH
EYFRDQGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGALQERITTTTK
HHHHHCCCEEEHHHHHHHHHHHCCHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHCCCC
GSITSVQAIYVPADDLTDPAPATSFAHLDATTTLNRAIAEKGIYPAVDPLDSTSRMLDPM
CCCEEEEEEEECCCCCCCCCCCCCCHHCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHCCH
VVGEEHYAVARQVQSILQRYKSLQDIIAILGMDELSEEDKQTVARARKIERFLSQPFFVA
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCEEEE
EVFTGAPGKLVDLADTIKGFKGLCNGDYDHLPEAAFYMVGGIEEAVEKAQRLAAEAA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA