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The map label for this gene is 13473428

Identifier: 13473428

GI number: 13473428

Start: 3214762

End: 3215130

Strand: Direct

Name: 13473428

Synonym: mlr4024

Alternate gene names: NA

Gene position: 3214762-3215130 (Clockwise)

Preceding gene: 13473426

Following gene: 13473429

Centisome position: 45.69

GC content: 67.48

Gene sequence:

>369_bases
ATGAGCGAACGGCGGGCGTGCAAAGCCATCGGCTGTTGCCGCATGACGGTTCGCTACGAGACCAGCAGGCCGGACTACGG
CGAGGTCCGCGAGCGGATGAAGGCGATCGCGCAGGAGCGTCGCCGGTTCGGCTTCCGGCGTCTTCTCGTGATGCTGAGGC
GGGAGGGCCCCGGCTCTATCGGGAGGAGAAGCTCGCCGAGTGGCCGCAAGCGGGCGATTGGGACCAGGGCGCCGATGCTG
GTGCCGCTGAGGCCCGACGAGCGCTGGTCGCTCGACTTCGTATCGGACCAACTCACCGACGGGCGCTGCTTCCGCATCAT
GGCCGTCGTCGACGATCGCACGAGAGAGGTGCCTGGCACTCATCGTTGA

Upstream 100 bases:

>100_bases
TTGCCCAGATGATGCTGCGGGAGGAGCGGGTCATCCCATTAATGGTGACGCCCGCGCGGCCAAGCGGAAAGCTGTCGCTC
GCCTGAAGGAAGGCTTCGGG

Downstream 100 bases:

>100_bases
TACGTCTCTCTCGGGCATGCGGGTTGCCCGCGATGCTATCCTCTCCTGGGCGGATCAGAACCGCGTCGAATGGCATTACA
TTGCGCCCGGCAAGCCGATG

Product: IS3 family transposase orfB

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 122; Mature: 121

Protein sequence:

>122_residues
MSERRACKAIGCCRMTVRYETSRPDYGEVRERMKAIAQERRRFGFRRLLVMLRREGPGSIGRRSSPSGRKRAIGTRAPML
VPLRPDERWSLDFVSDQLTDGRCFRIMAVVDDRTREVPGTHR

Sequences:

>Translated_122_residues
MSERRACKAIGCCRMTVRYETSRPDYGEVRERMKAIAQERRRFGFRRLLVMLRREGPGSIGRRSSPSGRKRAIGTRAPML
VPLRPDERWSLDFVSDQLTDGRCFRIMAVVDDRTREVPGTHR
>Mature_121_residues
SERRACKAIGCCRMTVRYETSRPDYGEVRERMKAIAQERRRFGFRRLLVMLRREGPGSIGRRSSPSGRKRAIGTRAPMLV
PLRPDERWSLDFVSDQLTDGRCFRIMAVVDDRTREVPGTHR

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 14199; Mature: 14068

Theoretical pI: Translated: 11.80; Mature: 11.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
8.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSERRACKAIGCCRMTVRYETSRPDYGEVRERMKAIAQERRRFGFRRLLVMLRREGPGSI
CCCCHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GRRSSPSGRKRAIGTRAPMLVPLRPDERWSLDFVSDQLTDGRCFRIMAVVDDRTREVPGT
CCCCCCCCCHHCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCCCC
HR
CC
>Mature Secondary Structure 
SERRACKAIGCCRMTVRYETSRPDYGEVRERMKAIAQERRRFGFRRLLVMLRREGPGSI
CCCHHHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GRRSSPSGRKRAIGTRAPMLVPLRPDERWSLDFVSDQLTDGRCFRIMAVVDDRTREVPGT
CCCCCCCCCHHCCCCCCCEEEECCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCCCCCC
HR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]