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The map label for this gene is ytcD [H]

Identifier: 13473399

GI number: 13473399

Start: 3186168

End: 3186581

Strand: Reverse

Name: ytcD [H]

Synonym: mll3985

Alternate gene names: 13473399

Gene position: 3186581-3186168 (Counterclockwise)

Preceding gene: 13473401

Following gene: 13473398

Centisome position: 45.29

GC content: 62.32

Gene sequence:

>414_bases
ATGACAAGAACTGACGAAAAAGTAAGGTACTTACCCGAAAGTAAGGGCAGTCCTGTAGGCAAGGCCCGGCCCCCGAATGA
GGTTGAGGCACTGACGCCGTTGTCGGCGGCGAGCGGCGTCGAGAATGTGCTGCGCATCCTCGAAGGCCGCTGGAAGCTGG
TGATCCTGTTTCATCTTTTCGGCGGCAAGGTGCTGCGCTTCTCCGACCTCGAACGGGCGATCCCAGCGATCTCGCAGAAG
ATGCTGATCCAACAGCTGCGGCAGATGGAGGCCGACGGCATCGTTCGCCGTATCGTCCACCACCAGGTGCCGCCGAAGGT
CGAGTACTGCCTGACCGATTGGGGCCAGGCCCTGTGCCCGGCCCTCGACGCCTTGCTGAAATGGGCGGCACTTCGCGAGC
CCGCGCAAGCCTGA

Upstream 100 bases:

>100_bases
CTGCGGAAGGTTTGCGGTCATGGTGTCGTCTCCGGTGTGGGTCGCCGCCACCGAGGCCGGCGGCGCTTGTCCGGCTTCTA
AAATGAGATATACTGGCGAA

Downstream 100 bases:

>100_bases
CGCTGATCGTCGTCCGGCAACGCGCCGTGAGCTCCGAAATGGAGCTTGTTTTCGGATCGGGGCCTCACCATATCGATTCC
AGGGAATGATAAAATTTCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MTRTDEKVRYLPESKGSPVGKARPPNEVEALTPLSAASGVENVLRILEGRWKLVILFHLFGGKVLRFSDLERAIPAISQK
MLIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCPALDALLKWAALREPAQA

Sequences:

>Translated_137_residues
MTRTDEKVRYLPESKGSPVGKARPPNEVEALTPLSAASGVENVLRILEGRWKLVILFHLFGGKVLRFSDLERAIPAISQK
MLIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCPALDALLKWAALREPAQA
>Mature_136_residues
TRTDEKVRYLPESKGSPVGKARPPNEVEALTPLSAASGVENVLRILEGRWKLVILFHLFGGKVLRFSDLERAIPAISQKM
LIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCPALDALLKWAALREPAQA

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=92, Percent_Identity=43.4782608695652, Blast_Score=71, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15360; Mature: 15229

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRTDEKVRYLPESKGSPVGKARPPNEVEALTPLSAASGVENVLRILEGRWKLVILFHLF
CCCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
GGKVLRFSDLERAIPAISQKMLIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCP
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALDALLKWAALREPAQA
HHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRTDEKVRYLPESKGSPVGKARPPNEVEALTPLSAASGVENVLRILEGRWKLVILFHLF
CCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
GGKVLRFSDLERAIPAISQKMLIQQLRQMEADGIVRRIVHHQVPPKVEYCLTDWGQALCP
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
ALDALLKWAALREPAQA
HHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]