| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is phaB [H]
Identifier: 13473297
GI number: 13473297
Start: 3086253
End: 3086978
Strand: Direct
Name: phaB [H]
Synonym: mlr3848
Alternate gene names: 13473297
Gene position: 3086253-3086978 (Clockwise)
Preceding gene: 13473296
Following gene: 13473299
Centisome position: 43.86
GC content: 63.77
Gene sequence:
>726_bases ATGACCAAGGTTGCAATCGTCACGGGCGGATCGCGCGGTATCGGCGCGGCGATCTCGATCGCTTTGAAGTCCGCCGGCTA TTCGGTTGCCGCGAACTATGCCGGCAATGACGAGGCGGCGGCGAAGTTCAAGGCCGAGACCGGCATTCCGGTCTACAAAT GGTCGGTCGCCGACTATGACGCTTGCGCCGCCGGCATCAAACAGGTCGAGGCCGACCTCGGCCCGGTCTCGGTGCTGGTC AACAATGCCGGCATCACCCGCGATGCCATGTTCCACAAGATCACCCGCGACCAGTGGAAAGAAGTTATCGACACCAATCT GTCCGGCGTCTTCAACATGACGCATCCGCTGTGGAACGGCATGCGCGACCGCAAGTTCGGCCGCGTCATCACCATCTCCT CGATCAACGGCCAGAAGGGCCAGGCCGGCCAGGTCAACTATTCCGCCGCCAAGGCCGGCGACATCGGCTTCTCGAAGGCG CTCGCCCAGGAGGGCGCTCGCGCGGGCATCACCGTCAACGTCATCTGCCCCGGCTACATCGCCACCGAAATGGTCAAGGC CATCGACGAGAAGGTGCTCAACGAGCGCATCCTGCCGCAGATCCCGGTCGGCCGCCTCGGCGAGCCGGAAGAGATCGCAC GCTGCGTCGTCTTCCTCGCCTCGCAGGATGCCGGCTTCATCACCGGCTCGACCATCACGGCCAATGGCGGCCAGTACTTC GTCTGA
Upstream 100 bases:
>100_bases AGCCCTCTGAGAAAACGATGACCGGGCGGCGCGAGCCGCCCGTTCCATATCCAGTGACTGCCAAGCCCGAAAACAGGGCG ATATCAAAAAGGGGAAATGC
Downstream 100 bases:
>100_bases GGCTTCCGGAGGCTCGGCAGAGGTCTGCTCGCCTGACAATCGACATTGTCAGGCGGCGAGTTTTAGTTTGGGTCCGGTTT CGGACTTGCTGGCCTCGACT
Product: beta-ketothiolase, acetoacetyl-CoA reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 241; Mature: 240
Protein sequence:
>241_residues MTKVAIVTGGSRGIGAAISIALKSAGYSVAANYAGNDEAAAKFKAETGIPVYKWSVADYDACAAGIKQVEADLGPVSVLV NNAGITRDAMFHKITRDQWKEVIDTNLSGVFNMTHPLWNGMRDRKFGRVITISSINGQKGQAGQVNYSAAKAGDIGFSKA LAQEGARAGITVNVICPGYIATEMVKAIDEKVLNERILPQIPVGRLGEPEEIARCVVFLASQDAGFITGSTITANGGQYF V
Sequences:
>Translated_241_residues MTKVAIVTGGSRGIGAAISIALKSAGYSVAANYAGNDEAAAKFKAETGIPVYKWSVADYDACAAGIKQVEADLGPVSVLV NNAGITRDAMFHKITRDQWKEVIDTNLSGVFNMTHPLWNGMRDRKFGRVITISSINGQKGQAGQVNYSAAKAGDIGFSKA LAQEGARAGITVNVICPGYIATEMVKAIDEKVLNERILPQIPVGRLGEPEEIARCVVFLASQDAGFITGSTITANGGQYF V >Mature_240_residues TKVAIVTGGSRGIGAAISIALKSAGYSVAANYAGNDEAAAKFKAETGIPVYKWSVADYDACAAGIKQVEADLGPVSVLVN NAGITRDAMFHKITRDQWKEVIDTNLSGVFNMTHPLWNGMRDRKFGRVITISSINGQKGQAGQVNYSAAKAGDIGFSKAL AQEGARAGITVNVICPGYIATEMVKAIDEKVLNERILPQIPVGRLGEPEEIARCVVFLASQDAGFITGSTITANGGQYFV
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=38.3720930232558, Blast_Score=155, Evalue=2e-38, Organism=Homo sapiens, GI40254992, Length=244, Percent_Identity=36.0655737704918, Blast_Score=139, Evalue=3e-33, Organism=Homo sapiens, GI4504505, Length=231, Percent_Identity=34.1991341991342, Blast_Score=108, Evalue=3e-24, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.7073170731707, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI19923817, Length=251, Percent_Identity=30.2788844621514, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI10190704, Length=247, Percent_Identity=30.3643724696356, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI7705925, Length=236, Percent_Identity=26.6949152542373, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI4758504, Length=252, Percent_Identity=30.1587301587302, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI59889578, Length=172, Percent_Identity=34.3023255813954, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI4503817, Length=228, Percent_Identity=27.1929824561404, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI31542939, Length=257, Percent_Identity=29.1828793774319, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI126723750, Length=247, Percent_Identity=26.7206477732794, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI66933014, Length=186, Percent_Identity=27.9569892473118, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=27.3109243697479, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI4503301, Length=204, Percent_Identity=28.4313725490196, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI7706318, Length=192, Percent_Identity=29.1666666666667, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI5031737, Length=243, Percent_Identity=30.0411522633745, Blast_Score=72, Evalue=3e-13, Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=29.8429319371728, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI226371731, Length=195, Percent_Identity=31.7948717948718, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI210032110, Length=192, Percent_Identity=24.4791666666667, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI83715985, Length=252, Percent_Identity=28.1746031746032, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI40807363, Length=192, Percent_Identity=24.4791666666667, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=44.0329218106996, Blast_Score=198, Evalue=3e-52, Organism=Escherichia coli, GI1790717, Length=237, Percent_Identity=31.6455696202532, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI87082100, Length=250, Percent_Identity=33.2, Blast_Score=121, Evalue=3e-29, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=33.0612244897959, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=30.0411522633745, Blast_Score=110, Evalue=8e-26, Organism=Escherichia coli, GI87082160, Length=240, Percent_Identity=32.5, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI1789208, Length=244, Percent_Identity=31.5573770491803, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI2367365, Length=235, Percent_Identity=31.4893617021277, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1786812, Length=240, Percent_Identity=28.75, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1789057, Length=256, Percent_Identity=28.90625, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=28.8537549407115, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787905, Length=239, Percent_Identity=27.1966527196653, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=30, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=27.2251308900524, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI25147288, Length=240, Percent_Identity=40.4166666666667, Blast_Score=151, Evalue=3e-37, Organism=Caenorhabditis elegans, GI17555706, Length=250, Percent_Identity=37.2, Blast_Score=144, Evalue=4e-35, Organism=Caenorhabditis elegans, GI17568967, Length=247, Percent_Identity=32.3886639676113, Blast_Score=118, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17560676, Length=248, Percent_Identity=31.8548387096774, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=32.258064516129, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI71994604, Length=247, Percent_Identity=28.7449392712551, Blast_Score=87, Evalue=7e-18, Organism=Caenorhabditis elegans, GI71994600, Length=248, Percent_Identity=28.6290322580645, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI193203115, Length=232, Percent_Identity=26.7241379310345, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115534694, Length=246, Percent_Identity=29.2682926829268, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193203117, Length=232, Percent_Identity=26.7241379310345, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17562990, Length=258, Percent_Identity=30.2325581395349, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17538182, Length=251, Percent_Identity=31.4741035856574, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17561272, Length=196, Percent_Identity=30.6122448979592, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17562904, Length=260, Percent_Identity=29.6153846153846, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17560150, Length=260, Percent_Identity=28.4615384615385, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=29.3233082706767, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17536651, Length=250, Percent_Identity=30, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI72000259, Length=260, Percent_Identity=27.6923076923077, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17536025, Length=247, Percent_Identity=28.3400809716599, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508895, Length=192, Percent_Identity=26.5625, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17562906, Length=260, Percent_Identity=27.6923076923077, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17538480, Length=264, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17565030, Length=261, Percent_Identity=30.2681992337165, Blast_Score=72, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560332, Length=265, Percent_Identity=29.0566037735849, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562908, Length=266, Percent_Identity=27.4436090225564, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI17531453, Length=268, Percent_Identity=27.6119402985075, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17564282, Length=196, Percent_Identity=24.4897959183673, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=27.7566539923954, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17563726, Length=258, Percent_Identity=25.968992248062, Blast_Score=68, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=27.0992366412214, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=27.6515151515151, Blast_Score=68, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6322861, Length=236, Percent_Identity=35.1694915254237, Blast_Score=119, Evalue=4e-28, Organism=Saccharomyces cerevisiae, GI6324126, Length=250, Percent_Identity=28.4, Blast_Score=78, Evalue=1e-15, Organism=Saccharomyces cerevisiae, GI6320089, Length=204, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=3e-12, Organism=Drosophila melanogaster, GI24639444, Length=244, Percent_Identity=34.8360655737705, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI23397609, Length=245, Percent_Identity=34.2857142857143, Blast_Score=113, Evalue=1e-25, Organism=Drosophila melanogaster, GI21355319, Length=242, Percent_Identity=33.8842975206612, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI18859837, Length=230, Percent_Identity=34.7826086956522, Blast_Score=107, Evalue=7e-24, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=32.6612903225806, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=31.2252964426877, Blast_Score=96, Evalue=2e-20, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=31.0483870967742, Blast_Score=89, Evalue=2e-18, Organism=Drosophila melanogaster, GI24643142, Length=238, Percent_Identity=29.8319327731092, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI116007236, Length=234, Percent_Identity=29.0598290598291, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24644337, Length=177, Percent_Identity=32.2033898305085, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI17737361, Length=236, Percent_Identity=30.0847457627119, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI221331218, Length=238, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24665243, Length=238, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24649181, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI221331216, Length=239, Percent_Identity=28.8702928870293, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24665247, Length=239, Percent_Identity=29.2887029288703, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007238, Length=175, Percent_Identity=31.4285714285714, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641232, Length=231, Percent_Identity=29.004329004329, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007234, Length=200, Percent_Identity=32, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI281364494, Length=198, Percent_Identity=32.8282828282828, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=28.4210526315789, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011283 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.36 [H]
Molecular weight: Translated: 25416; Mature: 25285
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKVAIVTGGSRGIGAAISIALKSAGYSVAANYAGNDEAAAKFKAETGIPVYKWSVADYD CCEEEEEECCCCCCCHHEEEEEHHCCCEEEEECCCCCHHHHEEECCCCCEEEEEECCCHH ACAAGIKQVEADLGPVSVLVNNAGITRDAMFHKITRDQWKEVIDTNLSGVFNMTHPLWNG HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCC MRDRKFGRVITISSINGQKGQAGQVNYSAAKAGDIGFSKALAQEGARAGITVNVICPGYI CCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHH ATEMVKAIDEKVLNERILPQIPVGRLGEPEEIARCVVFLASQDAGFITGSTITANGGQYF HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCEEEECCCEEC V C >Mature Secondary Structure TKVAIVTGGSRGIGAAISIALKSAGYSVAANYAGNDEAAAKFKAETGIPVYKWSVADYD CEEEEEECCCCCCCHHEEEEEHHCCCEEEEECCCCCHHHHEEECCCCCEEEEEECCCHH ACAAGIKQVEADLGPVSVLVNNAGITRDAMFHKITRDQWKEVIDTNLSGVFNMTHPLWNG HHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHHCC MRDRKFGRVITISSINGQKGQAGQVNYSAAKAGDIGFSKALAQEGARAGITVNVICPGYI CCCCCCCCEEEEEECCCCCCCCCCEECCCCCCCCCHHHHHHHHCCCCCCEEEEEEECCHH ATEMVKAIDEKVLNERILPQIPVGRLGEPEEIARCVVFLASQDAGFITGSTITANGGQYF HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEECCEEEECCCEEC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8566717 [H]