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The map label for this gene is rpoE [H]

Identifier: 13473184

GI number: 13473184

Start: 2983058

End: 2983609

Strand: Reverse

Name: rpoE [H]

Synonym: mll3697

Alternate gene names: 13473184

Gene position: 2983609-2983058 (Counterclockwise)

Preceding gene: 13473185

Following gene: 13473182

Centisome position: 42.4

GC content: 60.87

Gene sequence:

>552_bases
ATGGCAGCGGTCTCCCAAGGCTTCAAGACCGATCTGCTTGGGGCAATCCCGAGCCTGCGGGCCTTTGCCGTGTCGCTGAC
GCAGAATGCCGACAAGGCCGACGACCTCGTTCAGGAAACGCTGGTCAAGGCCTGGGACAAGCATGAGAGCTTCCAGCCCG
GCACCAACCTCAAGGCATGGCTTTTCACCATCCTGCGCAATGAATTCTATTCGCAGATGCGCAAACGCGGCCGCGAAGTG
CAGGACAGCGACGGCATCATGACGGCCAGGCTCGCGGTGCATCCGGCCCAGCATGGCCAACTCGATCTCAAGGATTTTCG
TGGTGCTCTCGAGCAGTTGCCGGAAGACCAGCGCGAGGCCATCATTCTCATCGGCGCATCGGGCTTTTCCTATGAGGAGG
CCGCTGAAATCTGCGGTTGCGCGGTCGGAACGATCAAGAGCCGCGTCAGCAGGGCGCGCACACGTCTGCAGGAGATTCTC
AAGATTTCCGGCGAGGACGAATATGGTCCCGATGCGATCTCTGCCCAGGTCACGGGGACTGCGGCGCATTGA

Upstream 100 bases:

>100_bases
ATATTATGACGAGCTGGTCTCCGACGATGTGCCGGATCGCTTTGCCCAGCTGCTCAGCCAGCTGGAACAGGCCGAACCCG
CACAGAAGAAGGACTGAGGC

Downstream 100 bases:

>100_bases
CGTGGTACCGGAACCCGGATCGACCTCAGCCTGGAAAGCCGCGCCCATAGGCCAGCGCCACCGCTTCAACGAGATCTTCG
CCTGAATAGGGTTTGGTGAC

Product: RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MAAVSQGFKTDLLGAIPSLRAFAVSLTQNADKADDLVQETLVKAWDKHESFQPGTNLKAWLFTILRNEFYSQMRKRGREV
QDSDGIMTARLAVHPAQHGQLDLKDFRGALEQLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARTRLQEIL
KISGEDEYGPDAISAQVTGTAAH

Sequences:

>Translated_183_residues
MAAVSQGFKTDLLGAIPSLRAFAVSLTQNADKADDLVQETLVKAWDKHESFQPGTNLKAWLFTILRNEFYSQMRKRGREV
QDSDGIMTARLAVHPAQHGQLDLKDFRGALEQLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARTRLQEIL
KISGEDEYGPDAISAQVTGTAAH
>Mature_182_residues
AAVSQGFKTDLLGAIPSLRAFAVSLTQNADKADDLVQETLVKAWDKHESFQPGTNLKAWLFTILRNEFYSQMRKRGREVQ
DSDGIMTARLAVHPAQHGQLDLKDFRGALEQLPEDQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARTRLQEILK
ISGEDEYGPDAISAQVTGTAAH

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=134, Percent_Identity=35.8208955223881, Blast_Score=64, Evalue=6e-12,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20062; Mature: 19931

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAVSQGFKTDLLGAIPSLRAFAVSLTQNADKADDLVQETLVKAWDKHESFQPGTNLKAW
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LFTILRNEFYSQMRKRGREVQDSDGIMTARLAVHPAQHGQLDLKDFRGALEQLPEDQREA
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHEECCCCCCCCCHHHHHHHHHHCCCCCCCE
IILIGASGFSYEEAAEICGCAVGTIKSRVSRARTRLQEILKISGEDEYGPDAISAQVTGT
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC
AAH
CCC
>Mature Secondary Structure 
AAVSQGFKTDLLGAIPSLRAFAVSLTQNADKADDLVQETLVKAWDKHESFQPGTNLKAW
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
LFTILRNEFYSQMRKRGREVQDSDGIMTARLAVHPAQHGQLDLKDFRGALEQLPEDQREA
HHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHEECCCCCCCCCHHHHHHHHHHCCCCCCCE
IILIGASGFSYEEAAEICGCAVGTIKSRVSRARTRLQEILKISGEDEYGPDAISAQVTGT
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCC
AAH
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]