| Definition | Mesorhizobium loti MAFF303099 chromosome, complete genome. |
|---|---|
| Accession | NC_002678 |
| Length | 7,036,071 |
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The map label for this gene is yciR [C]
Identifier: 13473025
GI number: 13473025
Start: 2826725
End: 2829151
Strand: Direct
Name: yciR [C]
Synonym: mlr3504
Alternate gene names: 13473025
Gene position: 2826725-2829151 (Clockwise)
Preceding gene: 13473020
Following gene: 13473027
Centisome position: 40.17
GC content: 65.68
Gene sequence:
>2427_bases GTGAACCAGCACGATCTGAGACTGGTCGCACTCGCCGCGCTGATCTGCGGAATTTCCTGCTTCTCCGCTGTCAGCCTGCT TCACCACATCAGCCGCTCGACGGACCGGAACCGGCTTGCCTGGCTGATGATCGCGGCCACGTCGACCGGCTTCGGCATCT GGGCAACGCATTTCATTGCCATGCTTGCGTTCACGCCCGGCATACCCAGCGCCTACGATCCGTGGCTCTCCGTGCTCTCG CTCGCCGCCTCGGTCGCGCTGACGGCGGCCGGCATGTGGATCGCCACCTTGCGCGACGAGTTCGAGCACCATCTCGTCGG CGGCGCCGTTCTGGGCGGCGGCATCGCGGCCATGCACTACACCGGCATGGCGGCATTCGAGGTGCAGGGCCGCATCGAAT GGAACCTGTTGATGGTCGCCGTCTCCCTGCTGGCCGGCGTGACGCTCGGGGCGCTGGCGCTGCATGTGGTGCTGCGTCGC CCTTCCTTGACGGCGACGTCCGTCGGCGCCGTGCTGCTGACACTGGCGATCTGCACCTTGCATTTCATCGGCATGGGCGC CGTCTCGATCTTTCCAGATTCCTCGATCGCCATATCCGAATACACGATCGAGCCGACCTCGCAGGCCTTCGCGGCCGCGG CCGCCACGCTGGTGATCCTGGTGCTGTCGGCGTCGGCGCTGTGGATCGATTTGCGCTTCCGTCGCCAGAAGCTCGAGGTC GATCGTATGCACGGCCTGGCCAATGCCGCCGTGGAGGGCCTGATCGTCTGCGACGGCAACCGCATCGTCAGCGCCAATGA CAGCATGGGCAAGCTGACCGGCACGCTTGCCGCGACGCTGAACGGCACGGAACTGCGCGAGCTCTTCGACGAACACACCG CAAACGACGCTGCCAGCCTAGCGGGCCAGCCATGGGAGGCAGAGTTGAGGAACCGCGACGGAACGCGGATTCCCGTCGAG CTGATCGCCCGAAGCATCGATTATTGCGGCAAGCCCCACAACGTCATCGCCGTCCGCGACATCCGCGAACGCAAGAAGGC GGAGGAGGAGATCCTTCGCCTCGCCCACTTCGATCCGCTGACGGGACTGGCCAACCGCCGCTCCTTTTCCAGCCGTCTCG ACATGGAAATCGCATCCATGAACCGGATCGCCAATGGCGACACGGGCGTCAAAGGCCGGCACCTTGCCCTTCTGCTGTTC GACCTCGACCGTTTCAAGGAGGTGAACGACCTTTACGGGCATGGCGCCGGCGATGCGATGCTGCAGAAGGTGGCGACCTG CGCAGCCGGCGTTCTGCGTCACGGACAGATGCTCGCGCGCCTCGGCGGCGACGAATTCGCCATCATCGCCCCCAACCTGC CCGACCCGCAGGCGGCGGGCCGCATCGCCGGCTCGCTGCTCGCCGCCATGCGCGAGGAAAACCGGGTCGCGGCCGGCGGC GGCCTGGTCTCTGCAAGCATCGGCATCGCGATTTATCCGCTCGATGCAGAAGACCAGACCGGCCTGATCAGCCATGCCGA CACCGCGCTCTACCGCGCCAAGACCGAAGGCAGGGACACGTATCGCTATTTCGAGGCCTCGATGGGCGCCGAGGCCCGCG ACAAGCGCATTATGGAGCACGAATTGCGCCAGGCCGTCGTGCGTGGCGAGTTCTACCTCGTCTACCAGCCGCAGAAGGAG ATCAGCAGCGGCAGGATGGTTGGCTTCGAAGCCTTGATCCGCTGGCGCCATCCCGAACGCGGCGACGTTTCCCCCGCGAC ATTCATCCCGGTGGCCGAGGAAAGCGGCGCCATTGGGCAGATCGGCGACTGGGTGCTCGACGCGGCCTGCGAGGAAGCCG CCCGCTGGAAAAATCCGCTGACGGTCGCCGTCAACGTCTCCGCGGTTCAGCTTCATAATCCCAATTTCAGCCGCAAGGTC CACGAGACGTTGCTAAGAACGGGCCTTGCGCCGACAAGGCTGGAACTCGAGATCACCGAAACCGCGCTGGTGAAGGACAT GCCGCGCGCGCTGGCAACCCTGCGGCAGGTCAAGTCGCTTGGCGTGCGCGTGGCCATGGACGATTTCGGAACCGGCTATT CCTCGCTCTCCAACCTGCGCGCCTTCCCCTTCGACAAGATCAAGATCGACGCCTCCTTCATCAAGGCGGTCGACACCAAC GGCCAGGTCGCGGCGATCGTGCGCGCCGTGCTGGGGCTGGGGCGCGGCCTTGGCCTGCCGGTTCTTGCCGAAGGTGTCGA GACGCTTGGCGAACTGAAGTTCCTGGACGCCGAGGCCTGCGAGATCGGCCAGGGCTACTATCTCGGCAAGCCGGCGCCCA TCGAGGCGTTCGACGACCTGACCGGCCACGGCAAGCGCACCCCAGCCCGCGCCGACCATCGAGAGGGCAGCGTCGTATTG CTGAAGCCAAGCGTGCGCTCGGCCTGA
Upstream 100 bases:
>100_bases TTTATCGATCCTTCAACAGCCAAGCCTTAATCAGTCATATTTCGTTTTTTATTTCCAATGGGCTTGGGGATATAAGATGT TGACGGTCTACAATTGCATC
Downstream 100 bases:
>100_bases TCCCTCACGATCCGAGTGCCGTCTCGACCAGCCGCCTGGCGTCGCGCCCCGACCATTCAGCCGGGCCGTTCATATGCGCG ATCAGACAGCCTTCGCTGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 808; Mature: 808
Protein sequence:
>808_residues MNQHDLRLVALAALICGISCFSAVSLLHHISRSTDRNRLAWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPWLSVLS LAASVALTAAGMWIATLRDEFEHHLVGGAVLGGGIAAMHYTGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVLRR PSLTATSVGAVLLTLAICTLHFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLVILVLSASALWIDLRFRRQKLEV DRMHGLANAAVEGLIVCDGNRIVSANDSMGKLTGTLAATLNGTELRELFDEHTANDAASLAGQPWEAELRNRDGTRIPVE LIARSIDYCGKPHNVIAVRDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHLALLLF DLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGG GLVSASIGIAIYPLDAEDQTGLISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEHELRQAVVRGEFYLVYQPQKE ISSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQIGDWVLDAACEEAARWKNPLTVAVNVSAVQLHNPNFSRKV HETLLRTGLAPTRLELEITETALVKDMPRALATLRQVKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTN GQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDLTGHGKRTPARADHREGSVVL LKPSVRSA
Sequences:
>Translated_808_residues MNQHDLRLVALAALICGISCFSAVSLLHHISRSTDRNRLAWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPWLSVLS LAASVALTAAGMWIATLRDEFEHHLVGGAVLGGGIAAMHYTGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVLRR PSLTATSVGAVLLTLAICTLHFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLVILVLSASALWIDLRFRRQKLEV DRMHGLANAAVEGLIVCDGNRIVSANDSMGKLTGTLAATLNGTELRELFDEHTANDAASLAGQPWEAELRNRDGTRIPVE LIARSIDYCGKPHNVIAVRDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHLALLLF DLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGG GLVSASIGIAIYPLDAEDQTGLISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEHELRQAVVRGEFYLVYQPQKE ISSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQIGDWVLDAACEEAARWKNPLTVAVNVSAVQLHNPNFSRKV HETLLRTGLAPTRLELEITETALVKDMPRALATLRQVKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTN GQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDLTGHGKRTPARADHREGSVVL LKPSVRSA >Mature_808_residues MNQHDLRLVALAALICGISCFSAVSLLHHISRSTDRNRLAWLMIAATSTGFGIWATHFIAMLAFTPGIPSAYDPWLSVLS LAASVALTAAGMWIATLRDEFEHHLVGGAVLGGGIAAMHYTGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVLRR PSLTATSVGAVLLTLAICTLHFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLVILVLSASALWIDLRFRRQKLEV DRMHGLANAAVEGLIVCDGNRIVSANDSMGKLTGTLAATLNGTELRELFDEHTANDAASLAGQPWEAELRNRDGTRIPVE LIARSIDYCGKPHNVIAVRDIRERKKAEEEILRLAHFDPLTGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHLALLLF DLDRFKEVNDLYGHGAGDAMLQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGG GLVSASIGIAIYPLDAEDQTGLISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEHELRQAVVRGEFYLVYQPQKE ISSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQIGDWVLDAACEEAARWKNPLTVAVNVSAVQLHNPNFSRKV HETLLRTGLAPTRLELEITETALVKDMPRALATLRQVKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTN GQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDLTGHGKRTPARADHREGSVVL LKPSVRSA
Specific function: Unknown
COG id: COG3300
COG function: function code T; MHYT domain (predicted integral membrane sensor domain)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=442, Percent_Identity=37.10407239819, Blast_Score=281, Evalue=1e-76, Organism=Escherichia coli, GI87081921, Length=487, Percent_Identity=29.7741273100616, Blast_Score=223, Evalue=4e-59, Organism=Escherichia coli, GI226510982, Length=392, Percent_Identity=29.8469387755102, Blast_Score=182, Evalue=7e-47, Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=36.2139917695473, Blast_Score=150, Evalue=3e-37, Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=33.6099585062241, Blast_Score=145, Evalue=1e-35, Organism=Escherichia coli, GI1790496, Length=242, Percent_Identity=30.9917355371901, Blast_Score=141, Evalue=2e-34, Organism=Escherichia coli, GI87081845, Length=258, Percent_Identity=33.7209302325581, Blast_Score=134, Evalue=2e-32, Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=32.0675105485232, Blast_Score=122, Evalue=1e-28, Organism=Escherichia coli, GI1788849, Length=461, Percent_Identity=26.6811279826464, Blast_Score=121, Evalue=1e-28, Organism=Escherichia coli, GI87081980, Length=256, Percent_Identity=30.46875, Blast_Score=119, Evalue=6e-28, Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=28.2157676348548, Blast_Score=114, Evalue=4e-26, Organism=Escherichia coli, GI1788381, Length=416, Percent_Identity=25.4807692307692, Blast_Score=112, Evalue=8e-26, Organism=Escherichia coli, GI87082096, Length=258, Percent_Identity=26.3565891472868, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI87081881, Length=209, Percent_Identity=35.4066985645933, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=35.2601156069364, Blast_Score=87, Evalue=3e-18, Organism=Escherichia coli, GI1789650, Length=448, Percent_Identity=22.3214285714286, Blast_Score=85, Evalue=2e-17, Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1787816, Length=171, Percent_Identity=30.4093567251462, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1787802, Length=143, Percent_Identity=32.8671328671329, Blast_Score=73, Evalue=8e-14, Organism=Escherichia coli, GI1788956, Length=170, Percent_Identity=34.1176470588235, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=30.7692307692308, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI87081977, Length=186, Percent_Identity=28.494623655914, Blast_Score=67, Evalue=4e-12, Organism=Escherichia coli, GI1787410, Length=222, Percent_Identity=24.3243243243243, Blast_Score=66, Evalue=1e-11, Organism=Escherichia coli, GI87082007, Length=133, Percent_Identity=33.0827067669173, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR005330 - InterPro: IPR000014 - InterPro: IPR013767 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]
EC number: NA
Molecular weight: Translated: 86986; Mature: 86986
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: PS50924 MHYT ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQHDLRLVALAALICGISCFSAVSLLHHISRSTDRNRLAWLMIAATSTGFGIWATHFIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHH MLAFTPGIPSAYDPWLSVLSLAASVALTAAGMWIATLRDEFEHHLVGGAVLGGGIAAMHY HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHH TGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVLRRPSLTATSVGAVLLTLAICTL CCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLVILVLSASALWIDLRFRRQKLEV HHHHCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH DRMHGLANAAVEGLIVCDGNRIVSANDSMGKLTGTLAATLNGTELRELFDEHTANDAASL HHHHHHHHHHHCEEEEECCCEEEECCCCCHHHHEEEEEECCCHHHHHHHHHHCCCHHHHH AGQPWEAELRNRDGTRIPVELIARSIDYCGKPHNVIAVRDIRERKKAEEEILRLAHFDPL CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCH TGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHLALLLFDLDRFKEVNDLYGHGAGDAM HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHH LQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGG HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCC GLVSASIGIAIYPLDAEDQTGLISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEH CEEEEECCEEEEECCCCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHHHHHH ELRQAVVRGEFYLVYQPQKEISSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQ HHHHHHHCCCEEEEECCHHHHCCCCEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC IGDWVLDAACEEAARWKNPLTVAVNVSAVQLHNPNFSRKVHETLLRTGLAPTRLELEITE HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHH TALVKDMPRALATLRQVKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTN HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCEEECHHHHHEECCC GQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDL CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCHHHHCCCCEECCCCCCCCHHHCC TGHGKRTPARADHREGSVVLLKPSVRSA CCCCCCCCCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure MNQHDLRLVALAALICGISCFSAVSLLHHISRSTDRNRLAWLMIAATSTGFGIWATHFIA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCHHHHHHHHH MLAFTPGIPSAYDPWLSVLSLAASVALTAAGMWIATLRDEFEHHLVGGAVLGGGIAAMHY HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHHH TGMAAFEVQGRIEWNLLMVAVSLLAGVTLGALALHVVLRRPSLTATSVGAVLLTLAICTL CCEEEEEEECCEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH HFIGMGAVSIFPDSSIAISEYTIEPTSQAFAAAAATLVILVLSASALWIDLRFRRQKLEV HHHHCCEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH DRMHGLANAAVEGLIVCDGNRIVSANDSMGKLTGTLAATLNGTELRELFDEHTANDAASL HHHHHHHHHHHCEEEEECCCEEEECCCCCHHHHEEEEEECCCHHHHHHHHHHCCCHHHHH AGQPWEAELRNRDGTRIPVELIARSIDYCGKPHNVIAVRDIRERKKAEEEILRLAHFDPL CCCCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCH TGLANRRSFSSRLDMEIASMNRIANGDTGVKGRHLALLLFDLDRFKEVNDLYGHGAGDAM HHHHHHHHHHHHHCHHHHHHHHCCCCCCCCCCCEEEEEEEEHHHHHHHHHHHCCCCHHHH LQKVATCAAGVLRHGQMLARLGGDEFAIIAPNLPDPQAAGRIAGSLLAAMREENRVAAGG HHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEECCC GLVSASIGIAIYPLDAEDQTGLISHADTALYRAKTEGRDTYRYFEASMGAEARDKRIMEH CEEEEECCEEEEECCCCCCCCCHHHHHHHHHEECCCCCHHHHHHHHHCCCCHHHHHHHHH ELRQAVVRGEFYLVYQPQKEISSGRMVGFEALIRWRHPERGDVSPATFIPVAEESGAIGQ HHHHHHHCCCEEEEECCHHHHCCCCEEEHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCC IGDWVLDAACEEAARWKNPLTVAVNVSAVQLHNPNFSRKVHETLLRTGLAPTRLELEITE HHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHH TALVKDMPRALATLRQVKSLGVRVAMDDFGTGYSSLSNLRAFPFDKIKIDASFIKAVDTN HHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCEEECHHHHHEECCC GQVAAIVRAVLGLGRGLGLPVLAEGVETLGELKFLDAEACEIGQGYYLGKPAPIEAFDDL CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHEEECCCHHHHCCCCEECCCCCCCCHHHCC TGHGKRTPARADHREGSVVLLKPSVRSA CCCCCCCCCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11259647 [H]