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The map label for this gene is 13472937

Identifier: 13472937

GI number: 13472937

Start: 2723774

End: 2724967

Strand: Direct

Name: 13472937

Synonym: mlr3387

Alternate gene names: NA

Gene position: 2723774-2724967 (Clockwise)

Preceding gene: 13472928

Following gene: 13472938

Centisome position: 38.71

GC content: 66.5

Gene sequence:

>1194_bases
ATGAAGCGCATCTATGTGGTGGGCACCGCCGACACCAAGGGCGAGGAACTCGCCTTCCTGGCCGATGCGATCGCTGCAAC
GGGTGCCGCCGTTTCCCGCGTCGATGTCGGAACGCGCGACGCAACAATACCCGTCGACATCAGCGCGAACGACATTGCCG
GCCACCACCCCGGCGGCCGTGACGCCGTGCTCGGCGGCAATGACCGTGGCGCCGCGGTCGCCGCCATGGGCGTTGCCTTC
GCCCGCTTTGCGCAATCGCGAAACGACATCGCCGCCATGATCGGCATTGGCGGCGGCGGCGGCACCTCGATCGTCACATC
GGGCATGCGCGCCCTGCCGCTCGGCCTGCCGAAAATCATGGTCTCGACGCTCGCCTCAGGCGACACGGCTCCCTATGTCG
ATGTCTCCGACATCATCATGATGCCGTCGGTGACCGACATGGCCGGGCTGAACCGGCTCTCCCGCGTCGTGTTGCACAAC
GCCGCCCAGGCGATAGCAGGCATGGCGGCAAGGCCGGCGCCGCCGCCCGACGGCAAACCGTCGATCGGCCTCACCATGTT
CGGCGTCACCACGCCTTGCGTGACCACTATCGCCGACGCGCTTCGCTCGACCTATGACTGCATGGTCTTCCACGCCACCG
GCACCGGCGGCCGCAGCATGGAGAAGCTGGCCGACAGCGGCCTGCTGTCCGGCGTCATCGACATCACCACGACCGAAGTC
TGCGACCTCCTGCTTGGCGGCGTGCTGCCGGCGACGGAGGACCGTTTCGGCGCGATCGCCCGCACCGGCCTGCCCTATGT
CGGCTCGGTCGGCGCGCTCGACATGGTCAACTTCTGGGCGCCTTCCACCGTTCCGGAACGCTATCGCGGACGGCTATTCT
ACGAGCACAATCCCAACGTCACGCTGATGCGCACAAGCGCGGACGAATGCCGCGCGATCGGCGAGTGGATCGGCACCAGG
CTCGCCCTCTGCGATGGGCCGGTGCATTTCCTGATCCCGGAAAAAGGCGTCTCGGCGCTCGACATCGAGGGCGGCACCTT
CTTCGATCGAGAGGCCGACGCCGTCCTGTTCGAAGCCATCGAGCGCACGATCAAGCCGAATGCCAATCGTCGCGTCACGC
GCTTGCCGCTGCACATCAACGACCCCGAATTCGCCAAGGCTGTCGCGGCTTTTCTCGACATCGCCAGACACTGA

Upstream 100 bases:

>100_bases
ACGATACGCGCGTCTCAAAAATTTGCAATGACCTTCGCATCGTCGAACGGCCGGGCAATGAGCGGCAGACGCATCGCGCC
TGCCTGGATTGGGGAACGCA

Downstream 100 bases:

>100_bases
GGTCCAAAAATATGCCTGCAATACCGCGCAAGGACATACTGAAGAAATTCCGGGGAATGATCGACAAGGGCGTGCCGATC
GTCGGCGGCGGCGCCGGCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKRIYVVGTADTKGEELAFLADAIAATGAAVSRVDVGTRDATIPVDISANDIAGHHPGGRDAVLGGNDRGAAVAAMGVAF
ARFAQSRNDIAAMIGIGGGGGTSIVTSGMRALPLGLPKIMVSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHN
AAQAIAGMAARPAPPPDGKPSIGLTMFGVTTPCVTTIADALRSTYDCMVFHATGTGGRSMEKLADSGLLSGVIDITTTEV
CDLLLGGVLPATEDRFGAIARTGLPYVGSVGALDMVNFWAPSTVPERYRGRLFYEHNPNVTLMRTSADECRAIGEWIGTR
LALCDGPVHFLIPEKGVSALDIEGGTFFDREADAVLFEAIERTIKPNANRRVTRLPLHINDPEFAKAVAAFLDIARH

Sequences:

>Translated_397_residues
MKRIYVVGTADTKGEELAFLADAIAATGAAVSRVDVGTRDATIPVDISANDIAGHHPGGRDAVLGGNDRGAAVAAMGVAF
ARFAQSRNDIAAMIGIGGGGGTSIVTSGMRALPLGLPKIMVSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHN
AAQAIAGMAARPAPPPDGKPSIGLTMFGVTTPCVTTIADALRSTYDCMVFHATGTGGRSMEKLADSGLLSGVIDITTTEV
CDLLLGGVLPATEDRFGAIARTGLPYVGSVGALDMVNFWAPSTVPERYRGRLFYEHNPNVTLMRTSADECRAIGEWIGTR
LALCDGPVHFLIPEKGVSALDIEGGTFFDREADAVLFEAIERTIKPNANRRVTRLPLHINDPEFAKAVAAFLDIARH
>Mature_397_residues
MKRIYVVGTADTKGEELAFLADAIAATGAAVSRVDVGTRDATIPVDISANDIAGHHPGGRDAVLGGNDRGAAVAAMGVAF
ARFAQSRNDIAAMIGIGGGGGTSIVTSGMRALPLGLPKIMVSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHN
AAQAIAGMAARPAPPPDGKPSIGLTMFGVTTPCVTTIADALRSTYDCMVFHATGTGGRSMEKLADSGLLSGVIDITTTEV
CDLLLGGVLPATEDRFGAIARTGLPYVGSVGALDMVNFWAPSTVPERYRGRLFYEHNPNVTLMRTSADECRAIGEWIGTR
LALCDGPVHFLIPEKGVSALDIEGGTFFDREADAVLFEAIERTIKPNANRRVTRLPLHINDPEFAKAVAAFLDIARH

Specific function: Unknown

COG id: COG5441

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0261 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3387_RHILO (Q98GC6)

Other databases:

- EMBL:   BA000012
- RefSeq:   NP_104504.1
- GeneID:   1227165
- GenomeReviews:   BA000012_GR
- KEGG:   mlo:mlr3387
- NMPDR:   fig|266835.1.peg.2608
- HOGENOM:   HBG373911
- OMA:   PKVMVST
- ProtClustDB:   PRK02399
- HAMAP:   MF_00677
- InterPro:   IPR008322
- PIRSF:   PIRSF033271

Pfam domain/function: PF06792 UPF0261

EC number: NA

Molecular weight: Translated: 41531; Mature: 41531

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIYVVGTADTKGEELAFLADAIAATGAAVSRVDVGTRDATIPVDISANDIAGHHPGGR
CCEEEEEECCCCCCCHHHHHHHHHHHCCCHHEEEECCCCCCEEEEECCCCCCCCCCCCCC
DAVLGGNDRGAAVAAMGVAFARFAQSRNDIAAMIGIGGGGGTSIVTSGMRALPLGLPKIM
CEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCHHHCCCCHHHH
VSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHNAAQAIAGMAARPAPPPDGKP
HHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SIGLTMFGVTTPCVTTIADALRSTYDCMVFHATGTGGRSMEKLADSGLLSGVIDITTTEV
CCCEEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHH
CDLLLGGVLPATEDRFGAIARTGLPYVGSVGALDMVNFWAPSTVPERYRGRLFYEHNPNV
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCEEEEECCCE
TLMRTSADECRAIGEWIGTRLALCDGPVHFLIPEKGVSALDIEGGTFFDREADAVLFEAI
EEEECCHHHHHHHHHHHHCEEEEECCCEEEEECCCCCCEEEECCCEEECCCHHHHHHHHH
ERTIKPNANRRVTRLPLHINDPEFAKAVAAFLDIARH
HHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRIYVVGTADTKGEELAFLADAIAATGAAVSRVDVGTRDATIPVDISANDIAGHHPGGR
CCEEEEEECCCCCCCHHHHHHHHHHHCCCHHEEEECCCCCCEEEEECCCCCCCCCCCCCC
DAVLGGNDRGAAVAAMGVAFARFAQSRNDIAAMIGIGGGGGTSIVTSGMRALPLGLPKIM
CEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHCCCHHHCCCCHHHH
VSTLASGDTAPYVDVSDIIMMPSVTDMAGLNRLSRVVLHNAAQAIAGMAARPAPPPDGKP
HHHHCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
SIGLTMFGVTTPCVTTIADALRSTYDCMVFHATGTGGRSMEKLADSGLLSGVIDITTTEV
CCCEEEECCCHHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCHHHHHHHHHHHHHH
CDLLLGGVLPATEDRFGAIARTGLPYVGSVGALDMVNFWAPSTVPERYRGRLFYEHNPNV
HHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCHHHCCCEEEEECCCE
TLMRTSADECRAIGEWIGTRLALCDGPVHFLIPEKGVSALDIEGGTFFDREADAVLFEAI
EEEECCHHHHHHHHHHHHCEEEEECCCEEEEECCCCCCEEEECCCEEECCCHHHHHHHHH
ERTIKPNANRRVTRLPLHINDPEFAKAVAAFLDIARH
HHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11214968