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The map label for this gene is rbsB [H]

Identifier: 13472894

GI number: 13472894

Start: 2683175

End: 2684170

Strand: Direct

Name: rbsB [H]

Synonym: mlr3334

Alternate gene names: 13472894

Gene position: 2683175-2684170 (Clockwise)

Preceding gene: 13472893

Following gene: 13472895

Centisome position: 38.13

GC content: 64.36

Gene sequence:

>996_bases
ATGAAATTCGTGACCAGCATTCTCAACCGCCGCGCCGTGATGGCTCTGGCAGCAGCATCGATCCTCGCCGGCGTCATGCA
TTCGGCGCCGGTTTCGGCGGCGGACGTGACCATTCCGATCATCGTCAAGGACACCACGTCCTTCTACTGGCAGATCGTGC
TCGCCGGCGCCCGCAAGGCCGGCAAGGATCTCGGCGTCAACGTGCCGGAACTCGGCGCCCAGGCTGAAACCGACGTCAAC
GGCCAGATCTCCATCCTCGAGAACGCCGTCGCCGGCAACCCGGCCGCCGTCGTCATCGCGCCGACCGAAGCCAAGGCGCT
CGGCAAGCCGATCGACGAGGCAGCGGCCAAGGTCAAGGTCATCGGCATCGACTCCGGCGCCGACTCCAAGGCCTTCACCT
CGTTCCTGACCACTGACAACGTCCAGGGCGGCCGCGTCGCCGCGGACGGTCTTGCAGCAGCCATCGGTGCGGCCAATGGC
GGCAAGGTCGAAGGCAAGGTTGCCCTGATCACCGCACTGCCTGGCGCCGGCTCGCTCGAGCAGCGCGCCCAGGGCTTCAA
GGAACAGCTCAAGGCCAAGTACCCCGGCCTCGAGCTGATCGCCGACAAATATGCCGACGGCCAGGCCACCACCGGCCTCA
ACATCGCGACCGACCTGATCACCGCCAATCCGGACCTGAAGGGCATCTTCGCCTCCAACCTGATCATGGCGCAGGGCGTC
GGCCAGGCGATCGCCGAGAACAAGCTTGCCGGCAAGGTCGGCCTGATCGGCTTCGACAGCGACGAGAAGCTGATCAAGTT
CCTGAATGACGGCGTCATTTCCGGCCTCGTCGTCCAGGACCCCTACCGGATGGGCTATGACGGCATCAAGACCGCGCTCG
CCGCTTCGAAGGGCGAGAAGGTTGAGGCCAATGTCGACACCGGCGCCAACCTTGTCACCAAGGCCAACATGAAGGATCCC
AAGATTGACGCGCTGCTCAATCCGAAGCTCAAGTAA

Upstream 100 bases:

>100_bases
AAACAGCGTAAATGTTTTTTATTGATAAAGTTCTGTTTGGGCCACGCCTATCCGAACGGAGCTTCCGTAACGTTCACCGG
GCGACTTAGGGAGGAATCCT

Downstream 100 bases:

>100_bases
GCAACGGTAGAGACGCACAGTTTCCGGGGCCTCGTGCCCCGGAAACGACAGCGATATCGCTTGGAAATCCGGCAGCCTGG
GCTAGGTTGCTCTGGCGGGC

Product: periplasmic ribose-binding protein, sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MKFVTSILNRRAVMALAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQAETDVN
GQISILENAVAGNPAAVVIAPTEAKALGKPIDEAAAKVKVIGIDSGADSKAFTSFLTTDNVQGGRVAADGLAAAIGAANG
GKVEGKVALITALPGAGSLEQRAQGFKEQLKAKYPGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGV
GQAIAENKLAGKVGLIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEKVEANVDTGANLVTKANMKDP
KIDALLNPKLK

Sequences:

>Translated_331_residues
MKFVTSILNRRAVMALAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQAETDVN
GQISILENAVAGNPAAVVIAPTEAKALGKPIDEAAAKVKVIGIDSGADSKAFTSFLTTDNVQGGRVAADGLAAAIGAANG
GKVEGKVALITALPGAGSLEQRAQGFKEQLKAKYPGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGV
GQAIAENKLAGKVGLIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEKVEANVDTGANLVTKANMKDP
KIDALLNPKLK
>Mature_331_residues
MKFVTSILNRRAVMALAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPELGAQAETDVN
GQISILENAVAGNPAAVVIAPTEAKALGKPIDEAAAKVKVIGIDSGADSKAFTSFLTTDNVQGGRVAADGLAAAIGAANG
GKVEGKVALITALPGAGSLEQRAQGFKEQLKAKYPGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGV
GQAIAENKLAGKVGLIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEKVEANVDTGANLVTKANMKDP
KIDALLNPKLK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=303, Percent_Identity=30.6930693069307, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790526, Length=288, Percent_Identity=29.5138888888889, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787795, Length=231, Percent_Identity=24.2424242424242, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 33888; Mature: 33888

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVTSILNRRAVMALAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHEEHHHHHHCHHC
GKDLGVNVPELGAQAETDVNGQISILENAVAGNPAAVVIAPTEAKALGKPIDEAAAKVKV
CCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCEEEEECCCHHHHCCCHHHHCCEEEE
IGIDSGADSKAFTSFLTTDNVQGGRVAADGLAAAIGAANGGKVEGKVALITALPGAGSLE
EEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCEECCEEEEEEECCCCCCHH
QRAQGFKEQLKAKYPGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGV
HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCC
GQAIAENKLAGKVGLIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEK
HHHHHHCCCCCEEEEEEECCHHHHHHHHHCCHHCCEEEECCHHCCHHHHHHHHHHCCCCE
VEANVDTGANLVTKANMKDPKIDALLNPKLK
EEEECCCCCCEEEECCCCCCCCHHCCCCCCC
>Mature Secondary Structure
MKFVTSILNRRAVMALAAASILAGVMHSAPVSAADVTIPIIVKDTTSFYWQIVLAGARKA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHEEHHHHHHCHHC
GKDLGVNVPELGAQAETDVNGQISILENAVAGNPAAVVIAPTEAKALGKPIDEAAAKVKV
CCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCCCCEEEEECCCHHHHCCCHHHHCCEEEE
IGIDSGADSKAFTSFLTTDNVQGGRVAADGLAAAIGAANGGKVEGKVALITALPGAGSLE
EEECCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHCCCCCCEECCEEEEEEECCCCCCHH
QRAQGFKEQLKAKYPGLELIADKYADGQATTGLNIATDLITANPDLKGIFASNLIMAQGV
HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCC
GQAIAENKLAGKVGLIGFDSDEKLIKFLNDGVISGLVVQDPYRMGYDGIKTALAASKGEK
HHHHHHCCCCCEEEEEEECCHHHHHHHHHCCHHCCEEEECCHHCCHHHHHHHHHHCCCCE
VEANVDTGANLVTKANMKDPKIDALLNPKLK
EEEECCCCCCEEEECCCCCCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]