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The map label for this gene is yhbH [C]

Identifier: 13472787

GI number: 13472787

Start: 2556361

End: 2556945

Strand: Reverse

Name: yhbH [C]

Synonym: mll3195

Alternate gene names: 13472787

Gene position: 2556945-2556361 (Counterclockwise)

Preceding gene: 13472788

Following gene: 13472786

Centisome position: 36.34

GC content: 60.17

Gene sequence:

>585_bases
ATGAATCTGCGCATATCGGGAAAACATATGGATATCGGCGATGCGTTCCGCACACGCATCAACGATCGTGTCGGCGAGGC
GATCGGCAAATATTTCGATCGCGGCTTTGCGGGACACGTCACCGTCATCAAATCGGGCTCGCGCTATTCGGCGGATTGCA
TGATCCGGCTGGATTCCGGCGCCTCGCTGCAGGCCACGGGCGATGCCCAGGATCCGACGCTCGCCTTCGAGGCTGCAGCC
GATCGGCTGGAGACCCGGCTTCGGCGCTACAAGCGCCGTCTCAAATCGCACAATTCAGGCAATGGCAACGGCGATTTGAC
CGACATCGCCTATACGGTGATGGCGCCGCTCGCCGATGACGACGAGGAGATCCCGGAGGATTTCGCGCCGGCCATCGTTG
CCGAATCGACCATGACGCTGAAGACCATGTCGGTGGCCTCCGCGGTCATCGAGCTCGATACCAAGGACAGTCCGGTGTTC
GTTTTCCGCAACGCCGGAACCGATCATCTCAATATCGTCTATCGCCGGCCCGACGGAAACATTGGCTGGATCGACCCGTC
CACGACCAAGGTCGCACAGGGATAA

Upstream 100 bases:

>100_bases
ATTTAAATCGGCGCGAGTGACGCCGCAAAGCTTGTGCGCACGGATCACGAGTATAAACTCGGGCCAGTTTGAAGCCTGAG
CAAGGAAGGTCAGTTTTCAG

Downstream 100 bases:

>100_bases
AGCCAGCCGCACGAGGGGTGGGGACTGGCGACGGCAGGCGAACAAGGGATTTTCAAGCATGGATCTGAGCGATCTTATCA
GCGTTCCGGCGATTTTGCCG

Product: sigma-54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSGASLQATGDAQDPTLAFEAAA
DRLETRLRRYKRRLKSHNSGNGNGDLTDIAYTVMAPLADDDEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVF
VFRNAGTDHLNIVYRRPDGNIGWIDPSTTKVAQG

Sequences:

>Translated_194_residues
MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSGASLQATGDAQDPTLAFEAAA
DRLETRLRRYKRRLKSHNSGNGNGDLTDIAYTVMAPLADDDEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVF
VFRNAGTDHLNIVYRRPDGNIGWIDPSTTKVAQG
>Mature_194_residues
MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSGASLQATGDAQDPTLAFEAAA
DRLETRLRRYKRRLKSHNSGNGNGDLTDIAYTVMAPLADDDEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVF
VFRNAGTDHLNIVYRRPDGNIGWIDPSTTKVAQG

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 21198; Mature: 21198

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSG
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCC
ASLQATGDAQDPTLAFEAAADRLETRLRRYKRRLKSHNSGNGNGDLTDIAYTVMAPLADD
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
DEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVFVFRNAGTDHLNIVYRRPDGN
HHHCCHHHCCHHHHCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCCCEEEEEEECCCCC
IGWIDPSTTKVAQG
EEEECCCCCCCCCC
>Mature Secondary Structure
MNLRISGKHMDIGDAFRTRINDRVGEAIGKYFDRGFAGHVTVIKSGSRYSADCMIRLDSG
CCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCC
ASLQATGDAQDPTLAFEAAADRLETRLRRYKRRLKSHNSGNGNGDLTDIAYTVMAPLADD
CEEEECCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCC
DEEIPEDFAPAIVAESTMTLKTMSVASAVIELDTKDSPVFVFRNAGTDHLNIVYRRPDGN
HHHCCHHHCCHHHHCCCHHHHHHHHHHHHEEECCCCCCEEEEECCCCCEEEEEEECCCCC
IGWIDPSTTKVAQG
EEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]