Click here to switch to the map view.

The map label for this gene is soxD [H]

Identifier: 13472723

GI number: 13472723

Start: 2499861

End: 2500157

Strand: Reverse

Name: soxD [H]

Synonym: msl3109

Alternate gene names: 13472723

Gene position: 2500157-2499861 (Counterclockwise)

Preceding gene: 13472724

Following gene: 13472722

Centisome position: 35.53

GC content: 60.94

Gene sequence:

>297_bases
ATGCTTCTCATCCGCTGCCCCTATTGCGAGGAAGAGCGCCCGGAGCTCGAATTCCGCAACGCCGGCGAGGCGCATATTGC
GCGCTCGGCCAACATTGCGGGCGAGAGCGACGACGACTTCGAAAAGTTCTTCTTCATCCGCTCCAATCCCAAGGGCACCA
TCTATGAGCGCTGGCGGCACATGCATGGCTGCGCGCGCTTCTTCAATGCGGTGCGCGACACCGTCACCGACAAGTTCGTC
ATGACCTACAAGGCCGGCGAACCCAAACCCGCCAAGCTGCCGGGAGTTGCCAAATGA

Upstream 100 bases:

>100_bases
GGCTGCGGCTCGTTGCGCCGTTTGTGACCATGGGCCAGAAGCTTTGCGACCAACCCCCCGGCGCCCGCGTCGGCCACGGC
GAATTGTAGGAACAAACAGA

Downstream 100 bases:

>100_bases
GCGGCGCGTTCCGCATCCCGAGAGCCGGTCGCCTCAGCCAGGCCAAGACCGCGCGGTTCAGCTTCGACGGCCAGTCCTAT
ACCGGCATCGAGGGCGACAC

Product: sarcosine oxidase delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MLLIRCPYCEEERPELEFRNAGEAHIARSANIAGESDDDFEKFFFIRSNPKGTIYERWRHMHGCARFFNAVRDTVTDKFV
MTYKAGEPKPAKLPGVAK

Sequences:

>Translated_98_residues
MLLIRCPYCEEERPELEFRNAGEAHIARSANIAGESDDDFEKFFFIRSNPKGTIYERWRHMHGCARFFNAVRDTVTDKFV
MTYKAGEPKPAKLPGVAK
>Mature_98_residues
MLLIRCPYCEEERPELEFRNAGEAHIARSANIAGESDDDFEKFFFIRSNPKGTIYERWRHMHGCARFFNAVRDTVTDKFV
MTYKAGEPKPAKLPGVAK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11328; Mature: 11328

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIRCPYCEEERPELEFRNAGEAHIARSANIAGESDDDFEKFFFIRSNPKGTIYERWRH
CEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
MHGCARFFNAVRDTVTDKFVMTYKAGEPKPAKLPGVAK
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MLLIRCPYCEEERPELEFRNAGEAHIARSANIAGESDDDFEKFFFIRSNPKGTIYERWRH
CEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
MHGCARFFNAVRDTVTDKFVMTYKAGEPKPAKLPGVAK
HHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]