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The map label for this gene is pdtaR [H]

Identifier: 13472528

GI number: 13472528

Start: 2292201

End: 2292851

Strand: Direct

Name: pdtaR [H]

Synonym: mlr2855

Alternate gene names: 13472528

Gene position: 2292201-2292851 (Clockwise)

Preceding gene: 13472527

Following gene: 13472529

Centisome position: 32.58

GC content: 63.75

Gene sequence:

>651_bases
GTGCTATGCCGCATTGCACAATTTCGCGGCCTTGCCCACAATGCAGGCATGGTCCGATCCTCCCTAGCCGTCCTGGTGAT
CGATGAAAATCGCATCCGCGCCTCGATCATCGAGGCCGGCCTGCGCGAGGCCGGCCATCAGCTTGTCACCGTCATTCATG
ACGTGACCGGCATTGCCCGGCGGATCGCCGAGATCGAACCGGACGTCATCGTCATCGACCTCGAAAACCCCAACCGCGAC
ATGCTCGAAAACATGTTCCAGCTGTCGCGCGCCGTGAAGCGCCCGATCGCCATGTTCGTCGACCGCTCCGACCAGGCCTC
GATCGAGGCCGCGGTCGATGCCGGCGTGTCGGCCTATGTCGTCGACGGTCTGCGGCAAGAGCGCGTCAAGCCGATCCTCG
ACATGGCGGTGAGCCGCTTCAATGCCTTCTCGCGCATGGCGCGCGAATTGGAAGAGGCGCGCAGCGAACTCGAGAGCCGC
AAGGTCATCGATCGCGCCAAGGGCATACTGATTAAGTCGCGCGGCCTCTCCGAAGAGGCCGCCTATACGCTGCTGCGCAA
GACGGCGATGAACCAGAACCGCAAGATCAGCGACATCGCCCAAAGCCTGGTGACCGCGGCCGGGCTGCTGGGGCCGGCGG
AGGACGAATGA

Upstream 100 bases:

>100_bases
GATCCGCGTCTGCGGCTGACCTACCCATGAGATAGCCGAAAACCGTCGCGCCTTTTGGTGGCAAACGATGATGCGACATA
GCCACGTTCCTTAAACCGGC

Downstream 100 bases:

>100_bases
GCATGAGGCACCAGATCACCGCCGGCTTCATGCCGCTTTTCGACAGCGCCGTGCTGGTCGCCGCGAGCGAGCTTGGCTTC
GCAGGCAGCGAAGGCGTTGA

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MLCRIAQFRGLAHNAGMVRSSLAVLVIDENRIRASIIEAGLREAGHQLVTVIHDVTGIARRIAEIEPDVIVIDLENPNRD
MLENMFQLSRAVKRPIAMFVDRSDQASIEAAVDAGVSAYVVDGLRQERVKPILDMAVSRFNAFSRMARELEEARSELESR
KVIDRAKGILIKSRGLSEEAAYTLLRKTAMNQNRKISDIAQSLVTAAGLLGPAEDE

Sequences:

>Translated_216_residues
MLCRIAQFRGLAHNAGMVRSSLAVLVIDENRIRASIIEAGLREAGHQLVTVIHDVTGIARRIAEIEPDVIVIDLENPNRD
MLENMFQLSRAVKRPIAMFVDRSDQASIEAAVDAGVSAYVVDGLRQERVKPILDMAVSRFNAFSRMARELEEARSELESR
KVIDRAKGILIKSRGLSEEAAYTLLRKTAMNQNRKISDIAQSLVTAAGLLGPAEDE
>Mature_216_residues
MLCRIAQFRGLAHNAGMVRSSLAVLVIDENRIRASIIEAGLREAGHQLVTVIHDVTGIARRIAEIEPDVIVIDLENPNRD
MLENMFQLSRAVKRPIAMFVDRSDQASIEAAVDAGVSAYVVDGLRQERVKPILDMAVSRFNAFSRMARELEEARSELESR
KVIDRAKGILIKSRGLSEEAAYTLLRKTAMNQNRKISDIAQSLVTAAGLLGPAEDE

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 23877; Mature: 23877

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCRIAQFRGLAHNAGMVRSSLAVLVIDENRIRASIIEAGLREAGHQLVTVIHDVTGIAR
CCCCHHHHHCCHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAEIEPDVIVIDLENPNRDMLENMFQLSRAVKRPIAMFVDRSDQASIEAAVDAGVSAYV
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHH
VDGLRQERVKPILDMAVSRFNAFSRMARELEEARSELESRKVIDRAKGILIKSRGLSEEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHH
AYTLLRKTAMNQNRKISDIAQSLVTAAGLLGPAEDE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLCRIAQFRGLAHNAGMVRSSLAVLVIDENRIRASIIEAGLREAGHQLVTVIHDVTGIAR
CCCCHHHHHCCHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RIAEIEPDVIVIDLENPNRDMLENMFQLSRAVKRPIAMFVDRSDQASIEAAVDAGVSAYV
HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCHHHHH
VDGLRQERVKPILDMAVSRFNAFSRMARELEEARSELESRKVIDRAKGILIKSRGLSEEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHH
AYTLLRKTAMNQNRKISDIAQSLVTAAGLLGPAEDE
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]