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The map label for this gene is yeaM [H]

Identifier: 13472401

GI number: 13472401

Start: 2160847

End: 2161725

Strand: Reverse

Name: yeaM [H]

Synonym: mll2686

Alternate gene names: 13472401

Gene position: 2161725-2160847 (Counterclockwise)

Preceding gene: 13472403

Following gene: 13472393

Centisome position: 30.72

GC content: 68.03

Gene sequence:

>879_bases
ATGCCGCATGGCAGGGAAATCTTCCGCGCCGGCAATGCCGATCTCGGCCAATTGCACCAGAGCCGCTGGCAATGGCTGGA
GGAGGTCGCCGGGCCGGCGGTGGCGTTGCCGACGGAATATCCCGACGGCTACCACGTGCCGCAACACCGCCACAGGCGCA
GCCAGTTGCTGCACGCGCTGGTCGGCGTGGTGCTGGTGACGACGCGGCATGGGCGCTGGATGGTGCCACCAGACCATGCG
ATGTGGATTCCGGCCGGCATCGAGCATTCCGTCGAGATGCTGGGCGATGTCTCGATGCGCTCGGTCTACGTCATGCCGGG
CGCAATCCCGGGGCTGCCGGAAGGCTTGCGCGTCGTCGGCGTCACCGAGCTGATGCACAGCCTGATCGTGGAATCGGAGA
AACTGCCGCAAGGCGGCGAGCTGGAGGGACGCGGCGGGTTGATCATGAAGCTGTTGCTGCATGAGATCCCGACCTTGCCG
GAACGGCCGCTCGGCCTGCCATTTCCGTCCGATGCGAGGCTGGCGGCGCTCTGCCGCCGCTTTGTCGCGGCACCTTCACC
GCATGCGACGATCGACGAATGGGCCGATGCCGCCGGCATGAGCCGGCGCTCCTTCACGCGCGCCTTCCAGCGCCAGACCG
GCCTGTCGCTGTCGACGTGGCGCCAGCAGGCCTGCTTGTTCGCGGCGCTGCCGCGGCTCGCCGATGGCGAGCCGATCACC
AGGGTGGCGCTCGATCTCGGCTATGACAGCGTGCCGGCCTTCATCACCATGTTCAAGCGCATGCTGGGCTCGTCGCCGCG
CGGCTATATGCGCGGCGCGCGAGACAATGGCGAAGGCATAAGGCGAGCCCCGCCCCGCCTTGAGGCTCCGGCGCCATAG

Upstream 100 bases:

>100_bases
CGCTCCCGCGGCCGCCTTAGGGACGGTTGCCTTATAGGCCGCTTGCCGCGCAACTTCTTTCGTGGTTTGGTCCAATAGTT
TCGCAAGTGGGCCATACAAG

Downstream 100 bases:

>100_bases
TAAGCAATGCCGGAGCGCGTTGACGCCTAGTCCATCTGAACGCCGCTCGGGCTTGACGATCGGCTCCCACTTGGCGAGTT
CAGCCTTCACATGCGTTGCC

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 291

Protein sequence:

>292_residues
MPHGREIFRAGNADLGQLHQSRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHA
MWIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLP
ERPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPIT
RVALDLGYDSVPAFITMFKRMLGSSPRGYMRGARDNGEGIRRAPPRLEAPAP

Sequences:

>Translated_292_residues
MPHGREIFRAGNADLGQLHQSRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHA
MWIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLP
ERPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPIT
RVALDLGYDSVPAFITMFKRMLGSSPRGYMRGARDNGEGIRRAPPRLEAPAP
>Mature_291_residues
PHGREIFRAGNADLGQLHQSRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHALVGVVLVTTRHGRWMVPPDHAM
WIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVGVTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLPE
RPLGLPFPSDARLAALCRRFVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPITR
VALDLGYDSVPAFITMFKRMLGSSPRGYMRGARDNGEGIRRAPPRLEAPAP

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=229, Percent_Identity=33.6244541484716, Blast_Score=132, Evalue=4e-32,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 32218; Mature: 32087

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHGREIFRAGNADLGQLHQSRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHAL
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
VGVVLVTTRHGRWMVPPDHAMWIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVG
HHHHHHCCCCCEEECCCCCCEEECCCHHHHHHHHHCHHHHEEEECCCCCCCCCCCHHHHH
VTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLPERPLGLPFPSDARLAALCRR
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
FVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPIT
HHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHH
RVALDLGYDSVPAFITMFKRMLGSSPRGYMRGARDNGEGIRRAPPRLEAPAP
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PHGREIFRAGNADLGQLHQSRWQWLEEVAGPAVALPTEYPDGYHVPQHRHRRSQLLHAL
CCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHH
VGVVLVTTRHGRWMVPPDHAMWIPAGIEHSVEMLGDVSMRSVYVMPGAIPGLPEGLRVVG
HHHHHHCCCCCEEECCCCCCEEECCCHHHHHHHHHCHHHHEEEECCCCCCCCCCCHHHHH
VTELMHSLIVESEKLPQGGELEGRGGLIMKLLLHEIPTLPERPLGLPFPSDARLAALCRR
HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
FVAAPSPHATIDEWADAAGMSRRSFTRAFQRQTGLSLSTWRQQACLFAALPRLADGEPIT
HHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHH
RVALDLGYDSVPAFITMFKRMLGSSPRGYMRGARDNGEGIRRAPPRLEAPAP
HHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]