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The map label for this gene is cspA [H]

Identifier: 13472379

GI number: 13472379

Start: 2143450

End: 2143662

Strand: Direct

Name: cspA [H]

Synonym: msr2657

Alternate gene names: 13472379

Gene position: 2143450-2143662 (Clockwise)

Preceding gene: 13472377

Following gene: 13472380

Centisome position: 30.46

GC content: 63.85

Gene sequence:

>213_bases
ATGGCCCAGACCGGCACCGTTAAATTCTTCAACGCGACCAAAGGCTTCGGTTTCATCACGCCCGACGGCGGCGCCAAGGA
TGTGTTCGTCCATATTTCCGCGATCGAGGCATCGGGCCTGCGCACGCTCGTCGACGGCCAGAAGGTCACCTTCGACGTCG
AGCCGGACCGCATGGGCAAGGGCCCGAAGGCGGTCAACCTCCGCGCTGCCTGA

Upstream 100 bases:

>100_bases
CGCCAATGCATGACTGCCGAAAGCAACCACCGGGAACTGCCCTCGACGCCAGGTGGCGGGCAGGACCACCAAAGACTGAA
CGGGTGAAGGAGTTTCCCCA

Downstream 100 bases:

>100_bases
ACCATCGGCGCCACGCGTCCCCGACGGCGGGCGAACGAGGGTTTCAAGCTCGCCCAGCCTATGGGCACGCAGACAGATTT
TTAAAAGGGCGCGGCGATTT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MAQTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDRMGKGPKAVNLRAA

Sequences:

>Translated_70_residues
MAQTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDRMGKGPKAVNLRAA
>Mature_69_residues
AQTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDRMGKGPKAVNLRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=56.9230769230769, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1789979, Length=66, Percent_Identity=59.0909090909091, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787839, Length=64, Percent_Identity=60.9375, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI2367114, Length=64, Percent_Identity=57.8125, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=55.3846153846154, Blast_Score=76, Evalue=3e-16,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=54.5454545454545, Blast_Score=71, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=61, Percent_Identity=54.0983606557377, Blast_Score=69, Evalue=7e-14,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7384; Mature: 7252

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDRMGK
CCCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCEEEECCCEEEEEECHHHCCC
GPKAVNLRAA
CCCEEEEEEC
>Mature Secondary Structure 
AQTGTVKFFNATKGFGFITPDGGAKDVFVHISAIEASGLRTLVDGQKVTFDVEPDRMGK
CCCCCEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCEEEECCCEEEEEECHHHCCC
GPKAVNLRAA
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10618253; 11481430 [H]