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The map label for this gene is ykoW [H]

Identifier: 13472293

GI number: 13472293

Start: 2056684

End: 2057532

Strand: Reverse

Name: ykoW [H]

Synonym: mll2537

Alternate gene names: 13472293

Gene position: 2057532-2056684 (Counterclockwise)

Preceding gene: 13472294

Following gene: 13472292

Centisome position: 29.24

GC content: 67.26

Gene sequence:

>849_bases
ATGAGGCTCGAGCGGCGGCGCACTGTCGGCGACGCGATCTTCGCCGACGAGATCGGCATCGAATACGGTGTCTTTGGCGA
GTTCCGGCTGCGCAGCGCCTACCAGCCGATCTTCGCGCCGCTTGGGCGTTCGCTGCACGCGGTGGCGGTCGAGGGCCTGA
TCGAGCCGCACCGCGCCGGCAGGGCAGGGTCGGCGCGGGCATTCTTCGAAAGCGTTGCCGCGGCGGACCGGCTGTTTGTC
GAGACCATGTGCCGGGTGCTGCATCTCAGGAATTTCCACAATATCGGCGTCGACGGGCTCGATCTGTTCTTCAACTACAA
CCCGATGGTCAACGACCATCCGGGGCGGGCGCTTGCCGAAATCCGGCTGATGAGCCGGCATCTCGGCGAGCTTGGCCTCG
CTCCGGGCATGCTGGTCTGCGAAATCACCGAACAGGCGGCGGACGACGCGCTTCTGGCGCGGCTGGTGCGCGAAATGCGG
CGCGACGGCATCCGCATCGCCATCGACGATTTCGGCACCGGCCATTCGACCGAGGAGCGGGTGAGCCTGGTTCAGCCCGA
CATCGTCAAGATCGATGGCGGCTGGTTCGCGGAGTTCTGCCGCCACGCCCCCGCCGAACGCTTCTTCCGCCCGCTGGTCT
CCAGCCTGCACGACCGCGGCGCCAGGGTGCTGGTCGAAGGCATCGAGCAGCCCGTCCATCTGCGCGTCGCGCTCGACGGC
GGCGTCGACCTGCTGCAGGGCTATCTTCTCGCCCGCCCGGCGCTGGCCGGCACCATCTTCGACGAAGAGCCGCTGTCAGT
CGATGCGCTGCTGGGCAGGGAAAACAATGTCGTGCCGCTGTTCGGCTAG

Upstream 100 bases:

>100_bases
CTCCGGACCCGGTTGCCGCCGCAAGCGATGGGTCCACTGCCCCCGCCGCCGCTCCGCGTACGGCGCGGCCGGCAAAAGCC
TTCGGGCGCAGGGTCGCGCC

Downstream 100 bases:

>100_bases
GGCATGCCGATATTCAGGTGATGCCGGCCTGACCTGAATCTCGACATGCCGTTGAGCGAGCGCTTTCACTTATCAGCGCC
GCTGATGGTCTCGCCAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MRLERRRTVGDAIFADEIGIEYGVFGEFRLRSAYQPIFAPLGRSLHAVAVEGLIEPHRAGRAGSARAFFESVAAADRLFV
ETMCRVLHLRNFHNIGVDGLDLFFNYNPMVNDHPGRALAEIRLMSRHLGELGLAPGMLVCEITEQAADDALLARLVREMR
RDGIRIAIDDFGTGHSTEERVSLVQPDIVKIDGGWFAEFCRHAPAERFFRPLVSSLHDRGARVLVEGIEQPVHLRVALDG
GVDLLQGYLLARPALAGTIFDEEPLSVDALLGRENNVVPLFG

Sequences:

>Translated_282_residues
MRLERRRTVGDAIFADEIGIEYGVFGEFRLRSAYQPIFAPLGRSLHAVAVEGLIEPHRAGRAGSARAFFESVAAADRLFV
ETMCRVLHLRNFHNIGVDGLDLFFNYNPMVNDHPGRALAEIRLMSRHLGELGLAPGMLVCEITEQAADDALLARLVREMR
RDGIRIAIDDFGTGHSTEERVSLVQPDIVKIDGGWFAEFCRHAPAERFFRPLVSSLHDRGARVLVEGIEQPVHLRVALDG
GVDLLQGYLLARPALAGTIFDEEPLSVDALLGRENNVVPLFG
>Mature_282_residues
MRLERRRTVGDAIFADEIGIEYGVFGEFRLRSAYQPIFAPLGRSLHAVAVEGLIEPHRAGRAGSARAFFESVAAADRLFV
ETMCRVLHLRNFHNIGVDGLDLFFNYNPMVNDHPGRALAEIRLMSRHLGELGLAPGMLVCEITEQAADDALLARLVREMR
RDGIRIAIDDFGTGHSTEERVSLVQPDIVKIDGGWFAEFCRHAPAERFFRPLVSSLHDRGARVLVEGIEQPVHLRVALDG
GVDLLQGYLLARPALAGTIFDEEPLSVDALLGRENNVVPLFG

Specific function: Probable signaling protein whose physiological role is not yet known [H]

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87082096, Length=135, Percent_Identity=31.8518518518519, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87081980, Length=119, Percent_Identity=34.453781512605, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 31230; Mature: 31230

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLERRRTVGDAIFADEIGIEYGVFGEFRLRSAYQPIFAPLGRSLHAVAVEGLIEPHRAG
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHCC
RAGSARAFFESVAAADRLFVETMCRVLHLRNFHNIGVDGLDLFFNYNPMVNDHPGRALAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHH
IRLMSRHLGELGLAPGMLVCEITEQAADDALLARLVREMRRDGIRIAIDDFGTGHSTEER
HHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
VSLVQPDIVKIDGGWFAEFCRHAPAERFFRPLVSSLHDRGARVLVEGIEQPVHLRVALDG
HHHCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECC
GVDLLQGYLLARPALAGTIFDEEPLSVDALLGRENNVVPLFG
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEECCC
>Mature Secondary Structure
MRLERRRTVGDAIFADEIGIEYGVFGEFRLRSAYQPIFAPLGRSLHAVAVEGLIEPHRAG
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHHHCC
RAGSARAFFESVAAADRLFVETMCRVLHLRNFHNIGVDGLDLFFNYNPMVNDHPGRALAE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCHHHHH
IRLMSRHLGELGLAPGMLVCEITEQAADDALLARLVREMRRDGIRIAIDDFGTGHSTEER
HHHHHHHHHHHCCCCCEEEEEEHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH
VSLVQPDIVKIDGGWFAEFCRHAPAERFFRPLVSSLHDRGARVLVEGIEQPVHLRVALDG
HHHCCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEEEECC
GVDLLQGYLLARPALAGTIFDEEPLSVDALLGRENNVVPLFG
CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377; 11728710 [H]