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The map label for this gene is ycaN [H]

Identifier: 13472243

GI number: 13472243

Start: 2008525

End: 2009421

Strand: Reverse

Name: ycaN [H]

Synonym: mll2472

Alternate gene names: 13472243

Gene position: 2009421-2008525 (Counterclockwise)

Preceding gene: 13472245

Following gene: 13472240

Centisome position: 28.56

GC content: 64.21

Gene sequence:

>897_bases
ATGAATGGCAAGCCCGGACTTCCGGAATTGACCGCGCTCGCCGCGATTGTCTCGCATCGCGGCTTCCGCAAGGCGGCCGA
CGATCTCGGCCTTTCGCCTTCGACGCTGAGCCACATGATGCGGACGCTGGAGCGGCGTATGGGTGTGCGCCTGCTCAACC
GCACCACGCGCAGCGTTGCGCCGACCGAGGCGGGCGAGCGGCTCGTCTCGCGCCTGCGGCCGCTTTTGTCGGATATCGAC
GCCGCATTGGCCGAGGTCGACGACTTCCGTGGTCTTGCATCGGGGACGCTGCGGATCAACACCAGCGAGATCGGCGCCCG
ATTGTTGCTTGGATCGGTGGTGCCGGCCTTTCTTCAGCGCTACCCTCAGGTTGCGCTCGATCTCGTCACCGAGGGAAGAC
TGGTCGATATCGTTGCCGAAGGCTTCGATGCCGGTATCCGCCTGGGCGAGGCCGTGCCGCAGGATATGGTTGCGGTGCGC
TTCGGCGGGCCGACACGCTTCATTGCCGTTGCATCGCCGGCCTATCTGGCCGGCCGCACGGTTCCGAGAGTGCCGGATGA
TCTCAGGGATCAAGCCTGCATTCGGTTTCGGTTGCCGAGCGGCAAACCCTACCGATGGGAGTTCGAGAAACACGGCCAGG
AGATTGCCATCGATGTCCCTGGCGCGCTGACGCTGGACAATATGGAGTTGATGGCCGAGGCAGCTGCCGGCGGTATGGGG
ATCGCTTATATCTCGGACAAATCCGCCAAGCCTTACCTCGACCGGGGAGCGCTTGTCGGTGTGCTGGAGGATTGGTGTCC
GCCCATTCCCGGCCTGTTCCTCTACTATCCAGGCCACCGGCTGGTGCCACCGGCGCTGCGCGCCTTCATCGACGTGCTGA
AGGAGACGAAGGGGTGA

Upstream 100 bases:

>100_bases
TCATGGGAAATGTCCTTTCATTGCTGACTTCGGCCAAGACTACGCCATCCAACTCATGATACTATCCGTTCAATTTCACA
TGGCTTGATGAAGATTTTCC

Downstream 100 bases:

>100_bases
GGCCGTTACTCCGCCGGGGCCGTCAGCGGCGGCGTGGCGTTGCTGCGCCCTTCCCAGACCTGGGAGACGACTGCCACCAC
CACGGCGACCAGCATGGCGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MNGKPGLPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGERLVSRLRPLLSDID
AALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQRYPQVALDLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVR
FGGPTRFIAVASPAYLAGRTVPRVPDDLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMG
IAYISDKSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG

Sequences:

>Translated_298_residues
MNGKPGLPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGERLVSRLRPLLSDID
AALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQRYPQVALDLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVR
FGGPTRFIAVASPAYLAGRTVPRVPDDLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMG
IAYISDKSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG
>Mature_298_residues
MNGKPGLPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVAPTEAGERLVSRLRPLLSDID
AALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQRYPQVALDLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVR
FGGPTRFIAVASPAYLAGRTVPRVPDDLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMG
IAYISDKSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=289, Percent_Identity=43.598615916955, Blast_Score=257, Evalue=6e-70,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=39.4463667820069, Blast_Score=211, Evalue=4e-56,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=31.2925170068027, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI87081978, Length=268, Percent_Identity=31.7164179104478, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI145693193, Length=277, Percent_Identity=32.8519855595668, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI1789440, Length=265, Percent_Identity=26.0377358490566, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=27.6450511945392, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788706, Length=306, Percent_Identity=26.4705882352941, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1786448, Length=278, Percent_Identity=26.978417266187, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1790399, Length=138, Percent_Identity=35.5072463768116, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=32.520325203252, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32307; Mature: 32307

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGKPGLPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVA
CCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTEAGERLVSRLRPLLSDIDAALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YPQVALDLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVRFGGPTRFIAVASPAYLAGRT
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHHHHCCC
VPRVPDDLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMG
CCCCCHHHHCCCEEEEECCCCCCEEEEHHHCCCEEEEECCCCEEECHHHHHHHHHCCCCE
IAYISDKSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG
EEEEECCCCCCCHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNGKPGLPELTALAAIVSHRGFRKAADDLGLSPSTLSHMMRTLERRMGVRLLNRTTRSVA
CCCCCCCHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PTEAGERLVSRLRPLLSDIDAALAEVDDFRGLASGTLRINTSEIGARLLLGSVVPAFLQR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHH
YPQVALDLVTEGRLVDIVAEGFDAGIRLGEAVPQDMVAVRFGGPTRFIAVASPAYLAGRT
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEECCCHHHHCCC
VPRVPDDLRDQACIRFRLPSGKPYRWEFEKHGQEIAIDVPGALTLDNMELMAEAAAGGMG
CCCCCHHHHCCCEEEEECCCCCCEEEEHHHCCCEEEEECCCCEEECHHHHHHHHHCCCCE
IAYISDKSAKPYLDRGALVGVLEDWCPPIPGLFLYYPGHRLVPPALRAFIDVLKETKG
EEEEECCCCCCCHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]