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The map label for this gene is yeeY [H]

Identifier: 13472204

GI number: 13472204

Start: 1970722

End: 1971678

Strand: Reverse

Name: yeeY [H]

Synonym: mll2420

Alternate gene names: 13472204

Gene position: 1971678-1970722 (Counterclockwise)

Preceding gene: 13472207

Following gene: 13472202

Centisome position: 28.02

GC content: 63.53

Gene sequence:

>957_bases
ATGCAGCCCAATCCGACACTCGACCAGCTTCAGATATTCGTTGCCGTCGCCGATAGCGGGAGTTTCTCGGCCGCCGGCCG
CAAACTCAACCGGGCGCAATCCGTCATCAGTTATGGCATCGCCAATCTCGAGGCGCAGCTTGGGCTGAAGCTGTTCGAAC
GCGAGGGCACGCGCGAGCCGCAACTGACCGAGATCGGCCGGTCGATGCTTGAGGATGCAAGGCGCATGATCGGGGTGCTG
CAGCGTATGCGCTCGCGCGTCGATGGCCATCATCATGGACTGGAGGCCGAAGTGGCGCTGTCGGTCGATGCGGCGTTGCC
TTCGCCGGTGCTGGTGCGGGTGCTGAAGGCGTTCGAGGCGCAGTTTCCGACCGTGATGCTGCGCCTGCATATAGGCTCGC
TTGGATTGATCCCGGACCATGTCGTCAGCGGACAGGCCGATCTCGGCATTGGCGGCCTGCTGGGCGATGTCGACGTGCAT
CTCGTGCGCATCGGTTTCATGTCGATCGTACTGGCCGCGGCGCCCAGCCACCCGCTGGCGCTGCTGCCAAAACCATTGGC
GATCGAGGATGTGCGCGAGCACACCCAGCTTGTCGTCACCGACCAGTCCGAACGGACCAAGGGACGCGACTTCGGTGTCT
TCGCCTACCGCACCTGGCGCCTCACGGATATGCGCACCAAACATATGCTGATGCGCGAAGGGCTGGGCTGGGGCGGCCTG
CCGCGGTGGCTGATCGCCGACGACCTGGTAAACGGCCGGCTGGTGGAACTCGACCTAGAACCCTTTAGCGAGGTGAAGTC
GCCGATGTTTGCCATGCATCGTAATGACAGCAGCCCCAAGCCCGCGGCGGCTTGGCTGATCGAACGGTTCAAGCGCGGGC
TTGGCTGCTTCAACGAGTTCGAGCCGGGCGAGGTGCCTGAGGACGAGCCGGAGACAATCCGTCAATCAGCGCCATGA

Upstream 100 bases:

>100_bases
TTCTCCAGTGGAATGAATTGTCCCGCTAGATATGGGATATCCATCCATCAGATAAACTGGTATATTTTATATACGATCCA
TCCACAAAATAGATACAGCG

Downstream 100 bases:

>100_bases
GCACGGCGCGGTAATCCTGCGCCGAAGCGCCGGCCTCGATGGCAAGTGCGGCGCGGTCGAAGGCGGAGGCGAGCAGCGCG
GTCAGTGCATCCACCGGCAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MQPNPTLDQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREPQLTEIGRSMLEDARRMIGVL
QRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEAQFPTVMLRLHIGSLGLIPDHVVSGQADLGIGGLLGDVDVH
LVRIGFMSIVLAAAPSHPLALLPKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGL
PRWLIADDLVNGRLVELDLEPFSEVKSPMFAMHRNDSSPKPAAAWLIERFKRGLGCFNEFEPGEVPEDEPETIRQSAP

Sequences:

>Translated_318_residues
MQPNPTLDQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREPQLTEIGRSMLEDARRMIGVL
QRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEAQFPTVMLRLHIGSLGLIPDHVVSGQADLGIGGLLGDVDVH
LVRIGFMSIVLAAAPSHPLALLPKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGL
PRWLIADDLVNGRLVELDLEPFSEVKSPMFAMHRNDSSPKPAAAWLIERFKRGLGCFNEFEPGEVPEDEPETIRQSAP
>Mature_318_residues
MQPNPTLDQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREPQLTEIGRSMLEDARRMIGVL
QRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEAQFPTVMLRLHIGSLGLIPDHVVSGQADLGIGGLLGDVDVH
LVRIGFMSIVLAAAPSHPLALLPKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGL
PRWLIADDLVNGRLVELDLEPFSEVKSPMFAMHRNDSSPKPAAAWLIERFKRGLGCFNEFEPGEVPEDEPETIRQSAP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082024, Length=257, Percent_Identity=30.7392996108949, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1786508, Length=292, Percent_Identity=27.7397260273973, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1787949, Length=312, Percent_Identity=28.525641025641, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1789492, Length=291, Percent_Identity=25.4295532646048, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1786713, Length=262, Percent_Identity=28.6259541984733, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1786401, Length=288, Percent_Identity=28.8194444444444, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI87082132, Length=286, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1789639, Length=171, Percent_Identity=28.0701754385965, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1787530, Length=260, Percent_Identity=25.7692307692308, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=142, Percent_Identity=30.9859154929577, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35156; Mature: 35156

Theoretical pI: Translated: 6.36; Mature: 6.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPNPTLDQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREP
CCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QLTEIGRSMLEDARRMIGVLQRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH
QFPTVMLRLHIGSLGLIPDHVVSGQADLGIGGLLGDVDVHLVRIGFMSIVLAAAPSHPLA
CCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
LLPKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGL
ECCCCCCHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCC
PRWLIADDLVNGRLVELDLEPFSEVKSPMFAMHRNDSSPKPAAAWLIERFKRGLGCFNEF
CHHHHHHHCCCCEEEEEECCHHHHHCCHHEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
EPGEVPEDEPETIRQSAP
CCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MQPNPTLDQLQIFVAVADSGSFSAAGRKLNRAQSVISYGIANLEAQLGLKLFEREGTREP
CCCCCCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
QLTEIGRSMLEDARRMIGVLQRMRSRVDGHHHGLEAEVALSVDAALPSPVLVRVLKAFEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEEECCCCCCHHHHHHHHHHHH
QFPTVMLRLHIGSLGLIPDHVVSGQADLGIGGLLGDVDVHLVRIGFMSIVLAAAPSHPLA
CCCEEEEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCE
LLPKPLAIEDVREHTQLVVTDQSERTKGRDFGVFAYRTWRLTDMRTKHMLMREGLGWGGL
ECCCCCCHHHHHHCCEEEEECCCCCCCCCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCC
PRWLIADDLVNGRLVELDLEPFSEVKSPMFAMHRNDSSPKPAAAWLIERFKRGLGCFNEF
CHHHHHHHCCCCEEEEEECCHHHHHCCHHEEHHCCCCCCCHHHHHHHHHHHHHCCCCCCC
EPGEVPEDEPETIRQSAP
CCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097040; 9278503 [H]