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The map label for this gene is ocd [H]

Identifier: 13472097

GI number: 13472097

Start: 1840303

End: 1841253

Strand: Direct

Name: ocd [H]

Synonym: mlr2282

Alternate gene names: 13472097

Gene position: 1840303-1841253 (Clockwise)

Preceding gene: 13472095

Following gene: 13472102

Centisome position: 26.16

GC content: 68.45

Gene sequence:

>951_bases
ATGAACACTGCCGAAACACTGCCCTACCTGTCGTCGGCGGTTCTCGATCGCCTGGCGATCTCGACGCCTGAAATCGTCGA
CGAGATCGAACGCCAGATCGTCGGCCAGAGGCGGGGCGAAGTCTGGTGCGCGCCCAAGGCCGCCGTGTGGCCGGGCGACG
ACCGCTACTTCATGGCCACGCTCGGCGTCGCCACCGTGCCATCAGTGCTGGCCACCAAGTCGCTGGTGGTGAACCCGCGC
AACGCCGCGCGCGGGCTGGCCACGCTCAATTCGCTGATCACCCTGCTCGACGCCGAGACCGGCCTGCCGCTGGCCCTGGT
CGACGGCAATTGGGTGACGGCCAAACGCACGGCGGGCCTCAGCGCCGTCGCCGCCAGGCGCATGGCAAGGCACGATGCGT
CGTCCGTCGCCTTCATCGGCTGCGGGGTGCAAGCGCGCGGCCACCTGGAAGCGTTCGCCGACCTCTTTCCGCTGCGCGAA
ATCCGCGCGTTCGGCCGCGGCAAAAGCAATCGCGAAGCGCTTTGCGAGATGGCGCGGTCGCGCGGCCTGGAAGCAATCCC
CTGCGACACGGCAAGGGCCGCGGTGGAGGGCGCCGACATGGTGGTGTCGACGGTGACCCTGGTGCCGGAACCCGAACCGT
TCCTCGACGCGAACTGGCTGAAACCGGGAAGCTTCACCGCCATCACCGACCTCGCACTGCCCTGGCTGCCCGAAACGATG
CGCCGCTTCGACCGCATCGTCGTCGACGATCTGGAGCAGGAGAAGAAGATGCCCAAACCCCTGGTCGACCCCACGCTGGT
CGCCGGCGACCTGACGGGCCTGGTCTGCGGTGATTTTGCGGGGCGGGAGGGACCGGGCGAGGCTACGGCGTTTGTGTTCC
GGGGCATGGCTGTTGGGGATCTGGCGGTGGCCGGGCTGGTGTATGTGCGGGCTCAGGCAGCGGGGGTGTGA

Upstream 100 bases:

>100_bases
TCTCATCGGCCAGGCATCCGGTCACGCCGCGCGCGGCGCGAGGCTTTCGGCCCCGCGCGCATCGTGTAGTCTGACGGTTT
TCCTGGGGAAACATGACACG

Downstream 100 bases:

>100_bases
CACAGAAAGACTGGGAGTACTTTCACGCGATCCATTCCACAATTATTTGTTAATCATCGCGCAAACAAGCGACAGACCGT
TCAAGAGAATGCAGGCCACC

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNTAETLPYLSSAVLDRLAISTPEIVDEIERQIVGQRRGEVWCAPKAAVWPGDDRYFMATLGVATVPSVLATKSLVVNPR
NAARGLATLNSLITLLDAETGLPLALVDGNWVTAKRTAGLSAVAARRMARHDASSVAFIGCGVQARGHLEAFADLFPLRE
IRAFGRGKSNREALCEMARSRGLEAIPCDTARAAVEGADMVVSTVTLVPEPEPFLDANWLKPGSFTAITDLALPWLPETM
RRFDRIVVDDLEQEKKMPKPLVDPTLVAGDLTGLVCGDFAGREGPGEATAFVFRGMAVGDLAVAGLVYVRAQAAGV

Sequences:

>Translated_316_residues
MNTAETLPYLSSAVLDRLAISTPEIVDEIERQIVGQRRGEVWCAPKAAVWPGDDRYFMATLGVATVPSVLATKSLVVNPR
NAARGLATLNSLITLLDAETGLPLALVDGNWVTAKRTAGLSAVAARRMARHDASSVAFIGCGVQARGHLEAFADLFPLRE
IRAFGRGKSNREALCEMARSRGLEAIPCDTARAAVEGADMVVSTVTLVPEPEPFLDANWLKPGSFTAITDLALPWLPETM
RRFDRIVVDDLEQEKKMPKPLVDPTLVAGDLTGLVCGDFAGREGPGEATAFVFRGMAVGDLAVAGLVYVRAQAAGV
>Mature_316_residues
MNTAETLPYLSSAVLDRLAISTPEIVDEIERQIVGQRRGEVWCAPKAAVWPGDDRYFMATLGVATVPSVLATKSLVVNPR
NAARGLATLNSLITLLDAETGLPLALVDGNWVTAKRTAGLSAVAARRMARHDASSVAFIGCGVQARGHLEAFADLFPLRE
IRAFGRGKSNREALCEMARSRGLEAIPCDTARAAVEGADMVVSTVTLVPEPEPFLDANWLKPGSFTAITDLALPWLPETM
RRFDRIVVDDLEQEKKMPKPLVDPTLVAGDLTGLVCGDFAGREGPGEATAFVFRGMAVGDLAVAGLVYVRAQAAGV

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI62241008, Length=235, Percent_Identity=30.6382978723404, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4503065, Length=235, Percent_Identity=30.6382978723404, Blast_Score=92, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 33711; Mature: 33711

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTAETLPYLSSAVLDRLAISTPEIVDEIERQIVGQRRGEVWCAPKAAVWPGDDRYFMAT
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEH
LGVATVPSVLATKSLVVNPRNAARGLATLNSLITLLDAETGLPLALVDGNWVTAKRTAGL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEHHHCCH
SAVAARRMARHDASSVAFIGCGVQARGHLEAFADLFPLREIRAFGRGKSNREALCEMARS
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RGLEAIPCDTARAAVEGADMVVSTVTLVPEPEPFLDANWLKPGSFTAITDLALPWLPETM
CCCCCCCCCHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
RRFDRIVVDDLEQEKKMPKPLVDPTLVAGDLTGLVCGDFAGREGPGEATAFVFRGMAVGD
HHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHH
LAVAGLVYVRAQAAGV
HHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTAETLPYLSSAVLDRLAISTPEIVDEIERQIVGQRRGEVWCAPKAAVWPGDDRYFMAT
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCEEEEH
LGVATVPSVLATKSLVVNPRNAARGLATLNSLITLLDAETGLPLALVDGNWVTAKRTAGL
HHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEHHHCCH
SAVAARRMARHDASSVAFIGCGVQARGHLEAFADLFPLREIRAFGRGKSNREALCEMARS
HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
RGLEAIPCDTARAAVEGADMVVSTVTLVPEPEPFLDANWLKPGSFTAITDLALPWLPETM
CCCCCCCCCHHHHHHCCCHHEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHH
RRFDRIVVDDLEQEKKMPKPLVDPTLVAGDLTGLVCGDFAGREGPGEATAFVFRGMAVGD
HHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHHHCCCCCCCCCCCHHHHHHHHCCHHHH
LAVAGLVYVRAQAAGV
HHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7873778 [H]