Click here to switch to the map view.

The map label for this gene is yqhC [H]

Identifier: 13472034

GI number: 13472034

Start: 1778552

End: 1779448

Strand: Direct

Name: yqhC [H]

Synonym: mlr2197

Alternate gene names: 13472034

Gene position: 1778552-1779448 (Clockwise)

Preceding gene: 13472032

Following gene: 13472035

Centisome position: 25.28

GC content: 67.56

Gene sequence:

>897_bases
GTGATGAAATCGCTCGACAACCTCAAAGCGCTGGTGATGCGCCATGCGCGCGGCCGGCTGACCGAAACCGGCATCCCCCG
CGTCGCCATCATGAAGGGCGAGGCGACGACCGGGCCGTTGCTGGGGCTCTACGACCCAAGGCTTTGCCTGGTCCTGCAGG
GCGCCAAATCCGTCATGATCGGCGATCAGCTGCTGCATTACGACGCCGGCCGCTACTTCATTGCCGCGGTCGAAGTGCCG
GCCGTCGGCAGGGTTTTGCAGGCCAGCCCACAGCATCCCTACCTCTCCGTCAGCCTGGCCTTCGACACCACGCTCATCGC
CTCGCTGCTGCTCGACATGCCGCCCGTTGCCGAGGCGCCGATCGGCCATGGCTTTGCCGTCAGCCGGGCCGACGAGGCGC
TGGTCGATGCGTGGCTGCGCATGATTGAGCTCATCGATCATCCGGCCGAAATCCCAGTGCTGGCGCCCTTGCTCGAACGC
GAAATCCTCTTTCGGCTGCTGCAAGGTCCGCAAGGCGCCATGCTGCGCCAGATTGCCGGCGCCGATAGCCGCCTGTCGCA
GATTCGCCGCGCGCTGGCCTGGATCCGCGACCACTATGCGGAGCCGTTCCGCGTCGAGGATCTTGCCCGCATGGCCGGCA
TGAGCGCCTCGGTGTTCCACCGCCACTTCAAGGCGGTCACGGCGATGACGCCGATCCAGTACCAGAAGCGCATCCGCCTC
AACGAAGCGCGCCGCCGCCTGCTCGCCACGTCGGGCGATGCGGCCGGCGTCGCCTTCTCCGTCGGCTATGAAAGCGCTTC
CCAGTTCTCCCGCGAATATGCCCGCCTCTTCGGCGCACCGCCGGTGCGCGATGTCGGCCGCCTGCGCGCCACGCCGGTGC
CCACCGAGCTCGCCTGA

Upstream 100 bases:

>100_bases
TGGGGCGGACCGCTGGCAGCTGCGTGCCGAAAACTGGTGAGTTCTTGCCTATTCCTGCCGGGAGCTTGATTGCCGGCGGC
GCCGATGCGATCTACAGGCT

Downstream 100 bases:

>100_bases
TCCCCTTGAATTCGAAGATGCAAGAGCAAGGCGGGAAGACCACGCCTTGCCAGCCCGTGCGCCGCGCCCTCGAGCGGCCC
GTGCGTCGGCTTCGACCGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MMKSLDNLKALVMRHARGRLTETGIPRVAIMKGEATTGPLLGLYDPRLCLVLQGAKSVMIGDQLLHYDAGRYFIAAVEVP
AVGRVLQASPQHPYLSVSLAFDTTLIASLLLDMPPVAEAPIGHGFAVSRADEALVDAWLRMIELIDHPAEIPVLAPLLER
EILFRLLQGPQGAMLRQIAGADSRLSQIRRALAWIRDHYAEPFRVEDLARMAGMSASVFHRHFKAVTAMTPIQYQKRIRL
NEARRRLLATSGDAAGVAFSVGYESASQFSREYARLFGAPPVRDVGRLRATPVPTELA

Sequences:

>Translated_298_residues
MMKSLDNLKALVMRHARGRLTETGIPRVAIMKGEATTGPLLGLYDPRLCLVLQGAKSVMIGDQLLHYDAGRYFIAAVEVP
AVGRVLQASPQHPYLSVSLAFDTTLIASLLLDMPPVAEAPIGHGFAVSRADEALVDAWLRMIELIDHPAEIPVLAPLLER
EILFRLLQGPQGAMLRQIAGADSRLSQIRRALAWIRDHYAEPFRVEDLARMAGMSASVFHRHFKAVTAMTPIQYQKRIRL
NEARRRLLATSGDAAGVAFSVGYESASQFSREYARLFGAPPVRDVGRLRATPVPTELA
>Mature_298_residues
MMKSLDNLKALVMRHARGRLTETGIPRVAIMKGEATTGPLLGLYDPRLCLVLQGAKSVMIGDQLLHYDAGRYFIAAVEVP
AVGRVLQASPQHPYLSVSLAFDTTLIASLLLDMPPVAEAPIGHGFAVSRADEALVDAWLRMIELIDHPAEIPVLAPLLER
EILFRLLQGPQGAMLRQIAGADSRLSQIRRALAWIRDHYAEPFRVEDLARMAGMSASVFHRHFKAVTAMTPIQYQKRIRL
NEARRRLLATSGDAAGVAFSVGYESASQFSREYARLFGAPPVRDVGRLRATPVPTELA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=273, Percent_Identity=32.967032967033, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1790339, Length=128, Percent_Identity=31.25, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32781; Mature: 32781

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKSLDNLKALVMRHARGRLTETGIPRVAIMKGEATTGPLLGLYDPRLCLVLQGAKSVMI
CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCHHHH
GDQLLHYDAGRYFIAAVEVPAVGRVLQASPQHPYLSVSLAFDTTLIASLLLDMPPVAEAP
HHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCC
IGHGFAVSRADEALVDAWLRMIELIDHPAEIPVLAPLLEREILFRLLQGPQGAMLRQIAG
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
ADSRLSQIRRALAWIRDHYAEPFRVEDLARMAGMSASVFHRHFKAVTAMTPIQYQKRIRL
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
NEARRRLLATSGDAAGVAFSVGYESASQFSREYARLFGAPPVRDVGRLRATPVPTELA
HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MMKSLDNLKALVMRHARGRLTETGIPRVAIMKGEATTGPLLGLYDPRLCLVLQGAKSVMI
CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCEEECCCCCEEEEECCCCHHHH
GDQLLHYDAGRYFIAAVEVPAVGRVLQASPQHPYLSVSLAFDTTLIASLLLDMPPVAEAP
HHHHHHCCCCCEEEEEECCCHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCCC
IGHGFAVSRADEALVDAWLRMIELIDHPAEIPVLAPLLEREILFRLLQGPQGAMLRQIAG
CCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHC
ADSRLSQIRRALAWIRDHYAEPFRVEDLARMAGMSASVFHRHFKAVTAMTPIQYQKRIRL
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHH
NEARRRLLATSGDAAGVAFSVGYESASQFSREYARLFGAPPVRDVGRLRATPVPTELA
HHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]