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The map label for this gene is rpoE [C]

Identifier: 13472023

GI number: 13472023

Start: 1769347

End: 1770399

Strand: Direct

Name: rpoE [C]

Synonym: mlr2184

Alternate gene names: 13472023

Gene position: 1769347-1770399 (Clockwise)

Preceding gene: 13472022

Following gene: 13472024

Centisome position: 25.15

GC content: 70.28

Gene sequence:

>1053_bases
ATGACAGACGCTCCCGGCCCGCTTGAGCCGCTGGGCTCGACAGGCGGGCCGATCCTCGATCGGCCTGCCTTCGAGCGCCT
GACGACGACCCATCGCCGTGCCCTGAAGCTCCACTGCTACCGGATGATGGGTTCGCTGCACGAGGCCGACGATCTCGTCC
AAGAGACGTTCCTCAAGGCCTGGCGCGGCCGCGCGCAATTCGACGGGCGCGGCTCGCCGCGCGGCTGGCTCTACACGATC
GCCACCAACGCCTGCCTCAACGCCATCAAGGCGCGGTCGTCGGCGCACCGTATCCTCGAAGAGCCCGCGCGGCCGCCGAG
CGAAGGGCGCGCCGCCGCCGGGCTGGCCGCCGAACTCTCCTGGCTGGAGCCCTACCCCGACGCCGAGCTGCCGGACCTCA
TCGATGGCGAGCCTGGCCCAGATGCGCGCTACGAGACAAGCGAGGCCGTGCGGCTTGCCTTCGTCGCCGCCATCCAGCTG
CTGCCGCCCAGGCAACGCGCATCCCTTTTGCTGTGCGACGTGCTGGGCTGGTCGGCGCTGGAGACCGCGCAATTGCTGGG
CGGCTCGACCGCCTCGGTCAACAGCGCCTTGCAGCGGGCGCGCGCGACGCTTGGCGAGCGCTATCCGCAGGGTCGTCCCC
AGCAGCGATCGCAGCCCAACCCGGAGGAAGGCGTGCTGCTCGAACGCTATATCAGCGCCTGGCAGGCCGCCAATCTCGAC
GGCTTCATCGCGCTGCTGCGCGAGGACGCCACCTACCACATGCCGCCATGGCGCGACTGGTATCGGGGTCGCCCGGCGAT
CCACGGTTTCTTCAAAACCGTGTGGGGCAATTTCGCCGGCTATCGCGCCGTGGCGACACGGGCCAACGGCCAGCCCGCCG
TGGCGATCTACGCACGGCGCCATCAGGAGCCGGAATGGCGCGCCCAGTCGCTGCATGTCATCGAGCCGGCCTATGGCGCC
ATCGCCTCACTCACGGTCTATGTCGCCCCGCTCGGCCCCGGCCTGTTCGCCGCGTTCGGCCTGCCGCCGGTCTGGTCCGG
ACCGCAAGCGTAG

Upstream 100 bases:

>100_bases
CAAGGTGCCAGGCATCGCCTTCACGGTGAGCGGCAGCGGTCTTGCCGCGGCGGCATGAGGCGCGCAGGATGCGAGGCGAA
CTCCGCATGGCAGGCTCGAC

Downstream 100 bases:

>100_bases
CCGTCGCCCACTTCTGCTGACAGAAAGCTGGCAGGAGGCCTGGCCTATAGAGCGGCCGGGAAGCCCGGCCGCGGCTTCAG
CCATCAAGGAGCCAATAATG

Product: RNA polymerase factor sigma-70

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Subunit; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma-70 Factor; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor SigM; Sigma Factor; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; RNA Polymerase Sigma Subunit ECF Family; RNA Polymerase Sigma-70 Factor SigG; Sigma-70 Region 2 Domain-Containing Protein; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma Factor RpoE; RNA Polymerase ECF-Type Sigma Factor SigG; Sigma-70 Family RNA Polymerase; RNA Polymerase Sigma Factor SigE; RNA Polymerase Sigma Factor Sigma-70 Family Protein; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma-70 Subunit; Sigma Factor Sigma; RNA Polymerase Sigma-W Factor; ECF-Sigma Factor; RNA Polymerase Sigma Factor SigJ; Sigma-70 Factor Sigg; RNA Polymerase Sigma-70 Factor Family Protein

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MTDAPGPLEPLGSTGGPILDRPAFERLTTTHRRALKLHCYRMMGSLHEADDLVQETFLKAWRGRAQFDGRGSPRGWLYTI
ATNACLNAIKARSSAHRILEEPARPPSEGRAAAGLAAELSWLEPYPDAELPDLIDGEPGPDARYETSEAVRLAFVAAIQL
LPPRQRASLLLCDVLGWSALETAQLLGGSTASVNSALQRARATLGERYPQGRPQQRSQPNPEEGVLLERYISAWQAANLD
GFIALLREDATYHMPPWRDWYRGRPAIHGFFKTVWGNFAGYRAVATRANGQPAVAIYARRHQEPEWRAQSLHVIEPAYGA
IASLTVYVAPLGPGLFAAFGLPPVWSGPQA

Sequences:

>Translated_350_residues
MTDAPGPLEPLGSTGGPILDRPAFERLTTTHRRALKLHCYRMMGSLHEADDLVQETFLKAWRGRAQFDGRGSPRGWLYTI
ATNACLNAIKARSSAHRILEEPARPPSEGRAAAGLAAELSWLEPYPDAELPDLIDGEPGPDARYETSEAVRLAFVAAIQL
LPPRQRASLLLCDVLGWSALETAQLLGGSTASVNSALQRARATLGERYPQGRPQQRSQPNPEEGVLLERYISAWQAANLD
GFIALLREDATYHMPPWRDWYRGRPAIHGFFKTVWGNFAGYRAVATRANGQPAVAIYARRHQEPEWRAQSLHVIEPAYGA
IASLTVYVAPLGPGLFAAFGLPPVWSGPQA
>Mature_349_residues
TDAPGPLEPLGSTGGPILDRPAFERLTTTHRRALKLHCYRMMGSLHEADDLVQETFLKAWRGRAQFDGRGSPRGWLYTIA
TNACLNAIKARSSAHRILEEPARPPSEGRAAAGLAAELSWLEPYPDAELPDLIDGEPGPDARYETSEAVRLAFVAAIQLL
PPRQRASLLLCDVLGWSALETAQLLGGSTASVNSALQRARATLGERYPQGRPQQRSQPNPEEGVLLERYISAWQAANLDG
FIALLREDATYHMPPWRDWYRGRPAIHGFFKTVWGNFAGYRAVATRANGQPAVAIYARRHQEPEWRAQSLHVIEPAYGAI
ASLTVYVAPLGPGLFAAFGLPPVWSGPQA

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38402; Mature: 38271

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDAPGPLEPLGSTGGPILDRPAFERLTTTHRRALKLHCYRMMGSLHEADDLVQETFLKA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGRAQFDGRGSPRGWLYTIATNACLNAIKARSSAHRILEEPARPPSEGRAAAGLAAELS
HCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
WLEPYPDAELPDLIDGEPGPDARYETSEAVRLAFVAAIQLLPPRQRASLLLCDVLGWSAL
HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH
ETAQLLGGSTASVNSALQRARATLGERYPQGRPQQRSQPNPEEGVLLERYISAWQAANLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
GFIALLREDATYHMPPWRDWYRGRPAIHGFFKTVWGNFAGYRAVATRANGQPAVAIYARR
HHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHEECCCCCCEEEEEEHH
HQEPEWRAQSLHVIEPAYGAIASLTVYVAPLGPGLFAAFGLPPVWSGPQA
CCCCCHHHCCEEEECCHHHHHHHHHEEEEECCCHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TDAPGPLEPLGSTGGPILDRPAFERLTTTHRRALKLHCYRMMGSLHEADDLVQETFLKA
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WRGRAQFDGRGSPRGWLYTIATNACLNAIKARSSAHRILEEPARPPSEGRAAAGLAAELS
HCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
WLEPYPDAELPDLIDGEPGPDARYETSEAVRLAFVAAIQLLPPRQRASLLLCDVLGWSAL
HCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHH
ETAQLLGGSTASVNSALQRARATLGERYPQGRPQQRSQPNPEEGVLLERYISAWQAANLD
HHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCH
GFIALLREDATYHMPPWRDWYRGRPAIHGFFKTVWGNFAGYRAVATRANGQPAVAIYARR
HHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHEECCCCCCEEEEEEHH
HQEPEWRAQSLHVIEPAYGAIASLTVYVAPLGPGLFAAFGLPPVWSGPQA
CCCCCHHHCCEEEECCHHHHHHHHHEEEEECCCHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA