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The map label for this gene is yhjC [H]

Identifier: 13471878

GI number: 13471878

Start: 1636036

End: 1636941

Strand: Direct

Name: yhjC [H]

Synonym: mlr1992

Alternate gene names: 13471878

Gene position: 1636036-1636941 (Clockwise)

Preceding gene: 13471871

Following gene: 13471880

Centisome position: 23.25

GC content: 60.38

Gene sequence:

>906_bases
ATGCAGAATCTCGAACCCATCCTCATCTTCATAACGGTAGCGGAAATGGGGAGCTTCACCCGCGCGGCCGATAGCCTGGG
CATCCAAAAAGGGAGGGCCTCAACGGCCGTCCGGAAGCTGGAGGAAGATGTCGGTGTCAGGCTCCTGCACCGGACGACGC
GCAGCGTGCAGTTGACGGAGGACGGACGCGCATTTCACGCCCGTGCGCGCGATCTGCTTGCTGACGTCGATGATCTGCAC
TCGATGTTCGCAAGCGATCGCGTCGCACTTCGCGGGCGTTTACGGGTCGATCTTCCGACCGAGGTGGCGCGCACAACGAT
CGTGCCGGCCTTGCCGGATTTCATGGCGACACATCCCGAGTTGGAACTGGAGGTGTCGAGTACGGATCGGCAGGTTGATC
TGGTTCAAGAGGGGTTCGACTGCGTGTTGCGACTTGGCCCCATAAGGGACGAGACGCTGATTGCCCGCCCGCTGGGCCTG
TTGCGCATGGTCAATGCCGCCAGTCCCGCCTATCTGGCGCGCTATGGCGTCCCTCGATCGCTGGAAGATCTCAAGCGTCA
GGAACATCGGACAATTCATTTTTCGACGATTCTGGGCGCAAGACCCCATGGATGGGAATATCCGGACGGCGACAACTACG
CGACGCTTCAATTACCAGGTGCGCTGCACGTCAACAGCGCTCAGACCTACGAAGCCGCTGCCCTCGCCGGCCTTGGCCTG
ATTCAGGCTCCACTCTTGGGGGTTGGCCAATACTTGGAGAGTGGAGCGCTGGTGGAGATCATACCCGATTTTCGTCGCCG
TGCGCTCGCCGTGTCCCTCGTCGTGGCACATCGGAGCAATCTGTCGCGCCGAGTCCGCGCTTTCATGAAATGGATCGAAG
ATGTGCTGACGCCGTATCTGGAATAG

Upstream 100 bases:

>100_bases
CGATCCCATATTCGAAGCTTACTGTGCCTCTTAGGTGTGATAAACACCAAGGAAACGAACCAACTGTTCTCTTTTCGGGA
AACAATATCGGGGCACGAAA

Downstream 100 bases:

>100_bases
CCAAACGCAGCTTTCCGGTGATGAGCCCGACCGCGTGAACGTCGACGCCGCCCGTCGAAGCCGATGCCAGGCACACCAGG
AATGGCTCGACCGCTCGAAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDGRAFHARARDLLADVDDLH
SMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGL
LRMVNAASPAYLARYGVPRSLEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL
IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTPYLE

Sequences:

>Translated_301_residues
MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDGRAFHARARDLLADVDDLH
SMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGL
LRMVNAASPAYLARYGVPRSLEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL
IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTPYLE
>Mature_301_residues
MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTEDGRAFHARARDLLADVDDLH
SMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPELELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGL
LRMVNAASPAYLARYGVPRSLEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL
IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTPYLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=301, Percent_Identity=42.1926910299003, Blast_Score=260, Evalue=7e-71,
Organism=Escherichia coli, GI1786401, Length=294, Percent_Identity=32.312925170068, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=28.7162162162162, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1787128, Length=292, Percent_Identity=27.7397260273973, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789440, Length=281, Percent_Identity=28.4697508896797, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87081978, Length=293, Percent_Identity=30.7167235494881, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1787589, Length=264, Percent_Identity=29.9242424242424, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1789173, Length=292, Percent_Identity=25, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI157672245, Length=165, Percent_Identity=32.1212121212121, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786508, Length=92, Percent_Identity=35.8695652173913, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790011, Length=266, Percent_Identity=23.6842105263158, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1790399, Length=159, Percent_Identity=30.188679245283, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=181, Percent_Identity=24.8618784530387, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788748, Length=167, Percent_Identity=28.1437125748503, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33430; Mature: 33430

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTE
CCCCCEEEEEEEEHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DGRAFHARARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEECCCHHHHHHHHHHCCHHHHHCCCC
LELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGLLRMVNAASPAYLARYGVPRS
EEEEECCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
LEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL
HHHHHHHHCCEEEEEHEECCCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHH
IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTPYL
HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure
MQNLEPILIFITVAEMGSFTRAADSLGIQKGRASTAVRKLEEDVGVRLLHRTTRSVQLTE
CCCCCEEEEEEEEHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECC
DGRAFHARARDLLADVDDLHSMFASDRVALRGRLRVDLPTEVARTTIVPALPDFMATHPE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECEEEECCCHHHHHHHHHHCCHHHHHCCCC
LELEVSSTDRQVDLVQEGFDCVLRLGPIRDETLIARPLGLLRMVNAASPAYLARYGVPRS
EEEEECCCCCHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCC
LEDLKRQEHRTIHFSTILGARPHGWEYPDGDNYATLQLPGALHVNSAQTYEAAALAGLGL
HHHHHHHHCCEEEEEHEECCCCCCCCCCCCCCEEEEEECCEEEECCCCHHHHHHHHHHHH
IQAPLLGVGQYLESGALVEIIPDFRRRALAVSLVVAHRSNLSRRVRAFMKWIEDVLTPYL
HHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]