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The map label for this gene is ycdJ [C]

Identifier: 13471725

GI number: 13471725

Start: 1482725

End: 1483627

Strand: Direct

Name: ycdJ [C]

Synonym: mlr1789

Alternate gene names: 13471725

Gene position: 1482725-1483627 (Clockwise)

Preceding gene: 13471722

Following gene: 13471728

Centisome position: 21.07

GC content: 68.22

Gene sequence:

>903_bases
ATGTTCCGTGATTTTCAGACGATGGAGGTCGATACCGGCGAGGCCGGCATATTTGTCCGCCGTGCGGGCAGCGGTCCGCC
GCTGCTGCTCTTGCACGGTTTTCCGCAGACCCATCTGATGTGGCGCGATGTGGCACCTGAATTGGCCAAGCGGTTTACCG
TCATCTGCGCCGACCTGCGCGGCTACGGCGCCAGCTCGTGCCCGCCGTCGGACAGCGCGCACGCCCCTTATGCCAAACGG
GCCATGGCCGCCGACATGGCGGCCCTGATGGCCAAGCTCGGCTTCGGCAGCTTCATGGTCGCCGGCCATGATCGCGGTGG
GCGGGTCGCCTACCGCATGGCGCTCGATCATCCCGGCCGCATTGAAAAGCTTGCGGTGCTGGACATCGTCGCAACGGCCG
ACGCCTGGGATCGGGCCGACGCCAGACTGGCGCAGGGCTATTGGCCCTGGTCACTGCTGGCGCAGCCCGAGCCCTTGCCG
GAGTTGATGCTGCGGGGATCCGCCGGGGCGGTCGTCGACAACGCGCTCGGCGGCTGGGGGTCATTGCCGTCAACGTTTCC
GCCCGAGATGCGCCAGGCCTATGTTGATGCCTTGCGCGATCCCGCCCACATCCACGCCATCTGCGAGGAATACCGCGCGG
CGGCGACGCTCGACCGTGAGCACGACCATGCCGACAAGGCCGCTGGCCGGCGCATCCGCTGCCCGGTGCTGGCGCTGTGG
AGCGGGCAAGGCGCGCTTGCCGATTGGTATGCGGGCGAAGGCGGGCCGTTGGCTCTTTGGCGGGGCTGGGCCGATGATGT
CCGCGGCCGGGCCATGCCCGGCGGCCATTTCTTCCCCGAGGAGGCGCCGGTACAAACCGCGCGGGAATTGGCGGATTTCT
TCGGCCAACCAGATCGCGCCTAG

Upstream 100 bases:

>100_bases
CCCAACGGCCCGAAAGGTTGGCGAACAAGGGTGGGCGCTCCCGCGCGTCCGCCCGCAACCAAATCCAGCCTCCGGCCGTT
GCCGGCAAGGAGGCATCACC

Downstream 100 bases:

>100_bases
AGGTCGACCTTGCCAGCGCCGCCTAAGGGACCGGGAAGCGAGGTTTCGCTGCATCGTCCGATGGGGCGGCAGGCGGATCG
GTCCTTTGCGGGCACTCCTC

Product: epoxide hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MFRDFQTMEVDTGEAGIFVRRAGSGPPLLLLHGFPQTHLMWRDVAPELAKRFTVICADLRGYGASSCPPSDSAHAPYAKR
AMAADMAALMAKLGFGSFMVAGHDRGGRVAYRMALDHPGRIEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLP
ELMLRGSAGAVVDNALGGWGSLPSTFPPEMRQAYVDALRDPAHIHAICEEYRAAATLDREHDHADKAAGRRIRCPVLALW
SGQGALADWYAGEGGPLALWRGWADDVRGRAMPGGHFFPEEAPVQTARELADFFGQPDRA

Sequences:

>Translated_300_residues
MFRDFQTMEVDTGEAGIFVRRAGSGPPLLLLHGFPQTHLMWRDVAPELAKRFTVICADLRGYGASSCPPSDSAHAPYAKR
AMAADMAALMAKLGFGSFMVAGHDRGGRVAYRMALDHPGRIEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLP
ELMLRGSAGAVVDNALGGWGSLPSTFPPEMRQAYVDALRDPAHIHAICEEYRAAATLDREHDHADKAAGRRIRCPVLALW
SGQGALADWYAGEGGPLALWRGWADDVRGRAMPGGHFFPEEAPVQTARELADFFGQPDRA
>Mature_300_residues
MFRDFQTMEVDTGEAGIFVRRAGSGPPLLLLHGFPQTHLMWRDVAPELAKRFTVICADLRGYGASSCPPSDSAHAPYAKR
AMAADMAALMAKLGFGSFMVAGHDRGGRVAYRMALDHPGRIEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLP
ELMLRGSAGAVVDNALGGWGSLPSTFPPEMRQAYVDALRDPAHIHAICEEYRAAATLDREHDHADKAAGRRIRCPVLALW
SGQGALADWYAGEGGPLALWRGWADDVRGRAMPGGHFFPEEAPVQTARELADFFGQPDRA

Specific function: Catalyzes the hydrolytic defluorination of fluoroacetate to produce glycolate. Has low activity towards chloroacetate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase superfamily. Epoxide hydrolase family [H]

Homologues:

Organism=Homo sapiens, GI218777840, Length=276, Percent_Identity=25, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI13376164, Length=276, Percent_Identity=25, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI27597073, Length=107, Percent_Identity=37.3831775700935, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI218777837, Length=298, Percent_Identity=22.8187919463087, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000073
- InterPro:   IPR000639 [H]

Pfam domain/function: PF00561 Abhydrolase_1 [H]

EC number: =3.8.1.3 [H]

Molecular weight: Translated: 32642; Mature: 32642

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRDFQTMEVDTGEAGIFVRRAGSGPPLLLLHGFPQTHLMWRDVAPELAKRFTVICADLR
CCCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
GYGASSCPPSDSAHAPYAKRAMAADMAALMAKLGFGSFMVAGHDRGGRVAYRMALDHPGR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
IEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLPELMLRGSAGAVVDNALGGWG
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCCCHHHHHCCCCCCHHHHCCCCCC
SLPSTFPPEMRQAYVDALRDPAHIHAICEEYRAAATLDREHDHADKAAGRRIRCPVLALW
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHCHHHHHCCCEEECCEEEEE
SGQGALADWYAGEGGPLALWRGWADDVRGRAMPGGHFFPEEAPVQTARELADFFGQPDRA
CCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MFRDFQTMEVDTGEAGIFVRRAGSGPPLLLLHGFPQTHLMWRDVAPELAKRFTVICADLR
CCCCCCEEEECCCCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
GYGASSCPPSDSAHAPYAKRAMAADMAALMAKLGFGSFMVAGHDRGGRVAYRMALDHPGR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCC
IEKLAVLDIVATADAWDRADARLAQGYWPWSLLAQPEPLPELMLRGSAGAVVDNALGGWG
HHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHCCCCCCCHHHHHCCCCCCHHHHCCCCCC
SLPSTFPPEMRQAYVDALRDPAHIHAICEEYRAAATLDREHDHADKAAGRRIRCPVLALW
CCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHCHHHHHCCCEEECCEEEEE
SGQGALADWYAGEGGPLALWRGWADDVRGRAMPGGHFFPEEAPVQTARELADFFGQPDRA
CCCCCCCCCCCCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA