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The map label for this gene is alsC [C]

Identifier: 13471657

GI number: 13471657

Start: 1418872

End: 1419786

Strand: Direct

Name: alsC [C]

Synonym: mlr1694

Alternate gene names: 13471657

Gene position: 1418872-1419786 (Clockwise)

Preceding gene: 13471656

Following gene: 13471658

Centisome position: 20.17

GC content: 64.04

Gene sequence:

>915_bases
GTGATCGCCGTCATCCTCGCCTGCATTTTCCTGTCGTTCGCCACCGACGCCTTCGCAACGTCGAAGAACCTTTACAACAT
CACCCGCAACATCACCTTTGTCGCCATCGTCGCGCTCGGCATGACCTTCGTCATCATCACCGGCGGCATCGACCTGTCGG
TCGGCTCGGTGCTGTGCCTGTCGTCGATGGTGCTGGCCGTCACCATGCATGCCGGCTACTCGATCGAAATCGGCATCCTG
GCCTCGATCGCCACCGCGCTCGCCATCGGCGCCTTCAACGGCATCCTGACCGCCTATCTCGGGTTTCCACCTTTCGTGGT
GACGCTCGGCATGCTGTCGATTGCCCGCAGCCTGGCCATGGTCGCTTCCAACAACACCGTCGTCTTCCAGTTCGGCCCGG
ATCACGACAAGCTGCTGGCGCTCGGCGGCGGCGCCTGGGTGTTCGGCATCGCCAATCCGGTGCTCTACATGATCCTTTTG
GCGCTGATCACCGGCTTCATCCTGCGCTGGACCAAGTTCGGCCGGCACATCTTCGCCATTGGCGGCAACGAGCACGCGGC
GACGCTGACCGGCGTCCCGGTGAAGCAGATCAAGGTCGCCGTCTACATGATATCGGCGCTGTCGGCGGGCATTGCCGGCA
TCATCCAGACCGGATGGCTCGGCGCCGTCACCACCAATCTCGGCACCGGCATGGAGCTGCAGGTGATCGCCGCCACCGTC
ATCGGCGGCGCCAACCTGGCCGGCGGCGTCGGCACCGCCTTCGGCGCCATTGTCGGTGCGGCTCTCATCGAGGTCATCCG
CAACAGCCTTGGCCTGCTCGGCATCAATGCCTTCTGGCAAGGCACATTCATCGGCGGCGCCATCCTGCTGGCGGTGCTGT
TCGACCGCATCCGCAATTTCAGGCGCAGCGACTGA

Upstream 100 bases:

>100_bases
GCAGGAAAGGTCGATAATGGCAGTCACCCTTGACCAGACGATCGCACAGAAGCAGCACAGTTTCTTCTCGCGGCTGTTCT
CCACCCAGACCTTCTGGGTG

Downstream 100 bases:

>100_bases
TTCAAGCGCCTTTCCTTCTCCCCTGGGGGAGAAGGAAAGTGCCAGGCGTTATTCGTTTCACCTCCTATCGCTCAGTCTGA
AAATCGGCCGAAGCGGCTCG

Product: permease protein of sugar ABC transporter

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MIAVILACIFLSFATDAFATSKNLYNITRNITFVAIVALGMTFVIITGGIDLSVGSVLCLSSMVLAVTMHAGYSIEIGIL
ASIATALAIGAFNGILTAYLGFPPFVVTLGMLSIARSLAMVASNNTVVFQFGPDHDKLLALGGGAWVFGIANPVLYMILL
ALITGFILRWTKFGRHIFAIGGNEHAATLTGVPVKQIKVAVYMISALSAGIAGIIQTGWLGAVTTNLGTGMELQVIAATV
IGGANLAGGVGTAFGAIVGAALIEVIRNSLGLLGINAFWQGTFIGGAILLAVLFDRIRNFRRSD

Sequences:

>Translated_304_residues
MIAVILACIFLSFATDAFATSKNLYNITRNITFVAIVALGMTFVIITGGIDLSVGSVLCLSSMVLAVTMHAGYSIEIGIL
ASIATALAIGAFNGILTAYLGFPPFVVTLGMLSIARSLAMVASNNTVVFQFGPDHDKLLALGGGAWVFGIANPVLYMILL
ALITGFILRWTKFGRHIFAIGGNEHAATLTGVPVKQIKVAVYMISALSAGIAGIIQTGWLGAVTTNLGTGMELQVIAATV
IGGANLAGGVGTAFGAIVGAALIEVIRNSLGLLGINAFWQGTFIGGAILLAVLFDRIRNFRRSD
>Mature_304_residues
MIAVILACIFLSFATDAFATSKNLYNITRNITFVAIVALGMTFVIITGGIDLSVGSVLCLSSMVLAVTMHAGYSIEIGIL
ASIATALAIGAFNGILTAYLGFPPFVVTLGMLSIARSLAMVASNNTVVFQFGPDHDKLLALGGGAWVFGIANPVLYMILL
ALITGFILRWTKFGRHIFAIGGNEHAATLTGVPVKQIKVAVYMISALSAGIAGIIQTGWLGAVTTNLGTGMELQVIAATV
IGGANLAGGVGTAFGAIVGAALIEVIRNSLGLLGINAFWQGTFIGGAILLAVLFDRIRNFRRSD

Specific function: Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790524, Length=297, Percent_Identity=35.6902356902357, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1790191, Length=299, Percent_Identity=37.123745819398, Blast_Score=153, Evalue=1e-38,
Organism=Escherichia coli, GI1788896, Length=304, Percent_Identity=34.8684210526316, Blast_Score=148, Evalue=3e-37,
Organism=Escherichia coli, GI145693152, Length=298, Percent_Identity=34.5637583892617, Blast_Score=145, Evalue=4e-36,
Organism=Escherichia coli, GI87082395, Length=286, Percent_Identity=33.5664335664336, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787793, Length=299, Percent_Identity=32.1070234113712, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1789992, Length=133, Percent_Identity=45.1127819548872, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI145693214, Length=232, Percent_Identity=38.3620689655172, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788471, Length=293, Percent_Identity=31.740614334471, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787794, Length=289, Percent_Identity=26.2975778546713, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 31512; Mature: 31512

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAVILACIFLSFATDAFATSKNLYNITRNITFVAIVALGMTFVIITGGIDLSVGSVLCL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
SSMVLAVTMHAGYSIEIGILASIATALAIGAFNGILTAYLGFPPFVVTLGMLSIARSLAM
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VASNNTVVFQFGPDHDKLLALGGGAWVFGIANPVLYMILLALITGFILRWTKFGRHIFAI
HCCCCEEEEEECCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GGNEHAATLTGVPVKQIKVAVYMISALSAGIAGIIQTGWLGAVTTNLGTGMELQVIAATV
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEHHHH
IGGANLAGGVGTAFGAIVGAALIEVIRNSLGLLGINAFWQGTFIGGAILLAVLFDRIRNF
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHH
RRSD
CCCC
>Mature Secondary Structure
MIAVILACIFLSFATDAFATSKNLYNITRNITFVAIVALGMTFVIITGGIDLSVGSVLCL
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHH
SSMVLAVTMHAGYSIEIGILASIATALAIGAFNGILTAYLGFPPFVVTLGMLSIARSLAM
HHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VASNNTVVFQFGPDHDKLLALGGGAWVFGIANPVLYMILLALITGFILRWTKFGRHIFAI
HCCCCEEEEEECCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEE
GGNEHAATLTGVPVKQIKVAVYMISALSAGIAGIIQTGWLGAVTTNLGTGMELQVIAATV
CCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEEEHHHH
IGGANLAGGVGTAFGAIVGAALIEVIRNSLGLLGINAFWQGTFIGGAILLAVLFDRIRNF
HCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHH
RRSD
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]