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The map label for this gene is rna [C]

Identifier: 13471593

GI number: 13471593

Start: 1340225

End: 1341157

Strand: Reverse

Name: rna [C]

Synonym: mll1611

Alternate gene names: 13471593

Gene position: 1341157-1340225 (Counterclockwise)

Preceding gene: 13471597

Following gene: 13471590

Centisome position: 19.06

GC content: 65.27

Gene sequence:

>933_bases
ATGAGCGGCACCTTCGTGGCCGACGCTGCCTGTCCGGCAACGCAGGCCATCAAGAACGGCAAGAACCCAGGCAATGTCTC
GACCGAGGCCGGGCAGAGCTACCAGCTGCTTGCCGGCAACAAGGACGCGCCGACGCATTATCTGATCCTGGTGCCCCGCG
CCGATCCGGAGCGCCGCTGGGTGAAGGTCACTTGCGGCCATCTCTCGGGCAGCAGTGCGGCGACGGTGCCGGCGGCACCT
GGCGGACAAGGCAAGCCTGCCGCCTCGGGAAAACCCGAATATGTCTTCGCGCTGAGCTGGCAGCCGGCTTTTTGCGAGAC
CAAGTCGAGCAAGACCGAATGCAGGGCGCAGAACCCGAGCGAGTTCGACGCCACCAACTTCACCTTGCATGGCTTGTGGC
CGCAGCCGAACGGCAATTTCTATTGCCAGGTGGCGGCAAGCGACAAGGCCAACGACAATCCGGCTCACTGGAAGGACCTG
CCGCCGGTCAATCTGGACGCCGGTACCCGCAAGGAGCTTGATCAGGTGATGCCGGGCACGGCCTCCCAGTTGGAACGGCA
TGAATGGATCAAGCACGGCACCTGCTACGGCAAGAGCCAGCAGGAATACTTCTCCGATGCGCTCGGCCTGATGCGACAGG
TCAACGCCTCGCCGGTCCGCGATCTCTTCGCCAAGACCATTGGCGGCAAGCTGACCGCGGACCAGATCCGTGGCGCCTTC
GACACCGCCTTCGGCGCCGGGGCAGGGGATCGCGTGCGGGTGTCCTGCGTCATCGATCCGTCGAACGGCCGGCGGCTGAT
CGGCGAACTCACGCTCGGCCTTGCCGGCCCGATCGGCCCGAACGCTTCGCTCAAGGACCTGCTGCTCGCCTCGGTGCCGA
CCAACAAGGCCGGTTGCCCGATAGGCACCGTCGACGCGATCGGGTTCCAGTAA

Upstream 100 bases:

>100_bases
CCCACTTCTCAGCCGGGGATTTCTCATGCGCATTGGTGTCGTTTTCGGATTGGCCATGCTGGCGGTGTCGCTGGCCAATG
CTGCGCGTGCCGAGGTCAAG

Downstream 100 bases:

>100_bases
GGACACTGCTGACCGGCATTGCGCGACAGAGAAAATCCTAGATCAGAACTGCGCCGACCTGGTCCAGGCGATGGCGGCGT
CCGGCTCATGGCCGGCCGGC

Product: ribonuclease

Products: 3'- Phosphomononucleotides; 3'-Phosphooligonucleotides [C]

Alternate protein names: Ribonuclease T2 Family Protein; Ribonuclease T2 Family; Ribonuclease I; Ribonuclease Protein; Enterobacter Ribonuclease Protein; Ribonuclease T2-Family Protein

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSGTFVADAACPATQAIKNGKNPGNVSTEAGQSYQLLAGNKDAPTHYLILVPRADPERRWVKVTCGHLSGSSAATVPAAP
GGQGKPAASGKPEYVFALSWQPAFCETKSSKTECRAQNPSEFDATNFTLHGLWPQPNGNFYCQVAASDKANDNPAHWKDL
PPVNLDAGTRKELDQVMPGTASQLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKTIGGKLTADQIRGAF
DTAFGAGAGDRVRVSCVIDPSNGRRLIGELTLGLAGPIGPNASLKDLLLASVPTNKAGCPIGTVDAIGFQ

Sequences:

>Translated_310_residues
MSGTFVADAACPATQAIKNGKNPGNVSTEAGQSYQLLAGNKDAPTHYLILVPRADPERRWVKVTCGHLSGSSAATVPAAP
GGQGKPAASGKPEYVFALSWQPAFCETKSSKTECRAQNPSEFDATNFTLHGLWPQPNGNFYCQVAASDKANDNPAHWKDL
PPVNLDAGTRKELDQVMPGTASQLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKTIGGKLTADQIRGAF
DTAFGAGAGDRVRVSCVIDPSNGRRLIGELTLGLAGPIGPNASLKDLLLASVPTNKAGCPIGTVDAIGFQ
>Mature_309_residues
SGTFVADAACPATQAIKNGKNPGNVSTEAGQSYQLLAGNKDAPTHYLILVPRADPERRWVKVTCGHLSGSSAATVPAAPG
GQGKPAASGKPEYVFALSWQPAFCETKSSKTECRAQNPSEFDATNFTLHGLWPQPNGNFYCQVAASDKANDNPAHWKDLP
PVNLDAGTRKELDQVMPGTASQLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKTIGGKLTADQIRGAFD
TAFGAGAGDRVRVSCVIDPSNGRRLIGELTLGLAGPIGPNASLKDLLLASVPTNKAGCPIGTVDAIGFQ

Specific function: One Of The Few RNAses That Cleaves The Phosphodiester Bond Between Any Two Nucleotide. Shows A Preference For Cytidylic Or Guanylic Acid. [C]

COG id: COG3719

COG function: function code J; Ribonuclease I

Gene ontology:

Cell location: Periplasmic Protein And Cytoplasm. [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.27.6 [C]

Molecular weight: Translated: 32764; Mature: 32633

Theoretical pI: Translated: 8.00; Mature: 8.00

Prosite motif: PS00530 RNASE_T2_1 ; PS00531 RNASE_T2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGTFVADAACPATQAIKNGKNPGNVSTEAGQSYQLLAGNKDAPTHYLILVPRADPERRW
CCCCEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEE
VKVTCGHLSGSSAATVPAAPGGQGKPAASGKPEYVFALSWQPAFCETKSSKTECRAQNPS
EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCHHCCCCCC
EFDATNFTLHGLWPQPNGNFYCQVAASDKANDNPAHWKDLPPVNLDAGTRKELDQVMPGT
CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
ASQLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKTIGGKLTADQIRGAF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEHHHHCCHH
DTAFGAGAGDRVRVSCVIDPSNGRRLIGELTLGLAGPIGPNASLKDLLLASVPTNKAGCP
HHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHEEECCCCCCCCC
IGTVDAIGFQ
CCCCCCCCCC
>Mature Secondary Structure 
SGTFVADAACPATQAIKNGKNPGNVSTEAGQSYQLLAGNKDAPTHYLILVPRADPERRW
CCCEEECCCCCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEECCCCCCEE
VKVTCGHLSGSSAATVPAAPGGQGKPAASGKPEYVFALSWQPAFCETKSSKTECRAQNPS
EEEEEECCCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCCHHCCCCCCCCHHCCCCCC
EFDATNFTLHGLWPQPNGNFYCQVAASDKANDNPAHWKDLPPVNLDAGTRKELDQVMPGT
CCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCC
ASQLERHEWIKHGTCYGKSQQEYFSDALGLMRQVNASPVRDLFAKTIGGKLTADQIRGAF
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEHHHHCCHH
DTAFGAGAGDRVRVSCVIDPSNGRRLIGELTLGLAGPIGPNASLKDLLLASVPTNKAGCP
HHHHCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCHHHHHEEECCCCCCCCC
IGTVDAIGFQ
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Nucleotides [C]

Specific reaction: Endonucleolytic Cleavage With 2',3'-Cyclic Phosphate Intermediates. [C]

General reaction: Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA