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The map label for this gene is yrrC [H]

Identifier: 13471448

GI number: 13471448

Start: 1186191

End: 1187318

Strand: Reverse

Name: yrrC [H]

Synonym: mll1421

Alternate gene names: 13471448

Gene position: 1187318-1186191 (Counterclockwise)

Preceding gene: 13471449

Following gene: 13471447

Centisome position: 16.87

GC content: 63.3

Gene sequence:

>1128_bases
ATGGAATTTTCTCCCCAACAGGACGAGGCGCTGCAAGCGGTCGCCCGCTGGCTGCAGGCCGGCAAGCCGCAGCTGTTCAG
GCTGTTCGGCTATGCCGGCACCGGCAAGACGACGCTGGCGCGCTATTTCGCCGAACATGTCGACGGTCAGGTGCAGTTCG
CAGCCTTCACCGGCAAGGCCGCACAAGTGCTGCGCTCCAAGGGGGCGGTCAATGCCCGCACCATCCACTCGCTGATCTAC
AGGCCCAAGGGTGAGGAATCAGTGGAAGACGAGGTGACCGGCAAGACCTCGATGTCGCCGACTTTTTCGCTCAACCGGCA
GAGCCCGATCTCGCGTGCGAAACTGGTCGTCATCGACGAATGTTCGATGGTCGACGAGCAGCTCGGCCGCGACCTGATGA
GTTTCGGCACGCCGATCCTGGTGCTGGGCGATCCCGGCCAGCTGCCGCCGATCTCGGGCGGTGGCTTCTTCACCGATCAC
GAGCCCGACTTCCTGCTCACCGAGATCCACCGGCAGGCGCGCGACAACCCGATCCTGCGGCTGGCGCTCGACGTGCGCGA
AGGCCGCGAATTCATGCGCGGCGACTATGGCACGGCGCAGGTGATCGGCAAGGAAGACGTCACCCAGGAACTGGTGCTGA
AGGCCGACCAGGTGCTGGTCGGCACCAATCGCACCCGCCGCCGCTACAATCAGCGCCTGCGCGAGCTGAAGGGCTTCAAT
GCCGACTATCCCCAGGCCGGCGACAAGCTGGTCTGCCTGCGCAACGATCCCGCCAAGGGGCTGCTCAACGGCTCCTTGTG
GAAGGTGATGACCTCGTCCCGCGAGACGGTGAAGCCGGGCATCAATCTTCTTGTGTCGCCGGAAGAGGACGATCCCGACC
GCGGAGTCGCCAAGATCAAGCTGCTCAAGGCGGCGTTCGAGGATCCCGACGCCGATATCCCCTGGCAGCAGAAGAAGCGT
TTTGATGATTTCGACTACGGCTATGCCTTGACCGTGCACAAGGCGCAGGGCTCGCAGTGGAACGAAATCGTGCTGTTCGA
TGAAAGCTGGGCCTTCAAGGAAACGCGCCAGCGCTGGCTCTATACCGCGATCACGCGAGCTGCCGAGCGATTGACCATCG
TCAGATAG

Upstream 100 bases:

>100_bases
TGCCTGATAGCCTGAAAGCGCGGGCGAGTTCACCGTCGCCAGTGTCGATGATGGTGGCGGCTGTCTTGTCTTTCCCTTGC
GAATCCGGTCACACGATCAG

Downstream 100 bases:

>100_bases
AGTTACGACGACGGCGTTTCTCGCACGCCGACGTGCCGGACCCCAAGCCATTCCCAGGCCTCGGCTTCATCCTCGGCGTC
GAAATGGCGGAATTCGATGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 375

Protein sequence:

>375_residues
MEFSPQQDEALQAVARWLQAGKPQLFRLFGYAGTGKTTLARYFAEHVDGQVQFAAFTGKAAQVLRSKGAVNARTIHSLIY
RPKGEESVEDEVTGKTSMSPTFSLNRQSPISRAKLVVIDECSMVDEQLGRDLMSFGTPILVLGDPGQLPPISGGGFFTDH
EPDFLLTEIHRQARDNPILRLALDVREGREFMRGDYGTAQVIGKEDVTQELVLKADQVLVGTNRTRRRYNQRLRELKGFN
ADYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDADIPWQQKKR
FDDFDYGYALTVHKAQGSQWNEIVLFDESWAFKETRQRWLYTAITRAAERLTIVR

Sequences:

>Translated_375_residues
MEFSPQQDEALQAVARWLQAGKPQLFRLFGYAGTGKTTLARYFAEHVDGQVQFAAFTGKAAQVLRSKGAVNARTIHSLIY
RPKGEESVEDEVTGKTSMSPTFSLNRQSPISRAKLVVIDECSMVDEQLGRDLMSFGTPILVLGDPGQLPPISGGGFFTDH
EPDFLLTEIHRQARDNPILRLALDVREGREFMRGDYGTAQVIGKEDVTQELVLKADQVLVGTNRTRRRYNQRLRELKGFN
ADYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDADIPWQQKKR
FDDFDYGYALTVHKAQGSQWNEIVLFDESWAFKETRQRWLYTAITRAAERLTIVR
>Mature_375_residues
MEFSPQQDEALQAVARWLQAGKPQLFRLFGYAGTGKTTLARYFAEHVDGQVQFAAFTGKAAQVLRSKGAVNARTIHSLIY
RPKGEESVEDEVTGKTSMSPTFSLNRQSPISRAKLVVIDECSMVDEQLGRDLMSFGTPILVLGDPGQLPPISGGGFFTDH
EPDFLLTEIHRQARDNPILRLALDVREGREFMRGDYGTAQVIGKEDVTQELVLKADQVLVGTNRTRRRYNQRLRELKGFN
ADYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIKLLKAAFEDPDADIPWQQKKR
FDDFDYGYALTVHKAQGSQWNEIVLFDESWAFKETRQRWLYTAITRAAERLTIVR

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR006345 [H]

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 42236; Mature: 42236

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFSPQQDEALQAVARWLQAGKPQLFRLFGYAGTGKTTLARYFAEHVDGQVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGAVNARTIHSLIYRPKGEESVEDEVTGKTSMSPTFSLNRQSPISRAKLVVIDE
HHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCEEEEEEEC
CSMVDEQLGRDLMSFGTPILVLGDPGQLPPISGGGFFTDHEPDFLLTEIHRQARDNPILR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LALDVREGREFMRGDYGTAQVIGKEDVTQELVLKADQVLVGTNRTRRRYNQRLRELKGFN
EEEEHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCC
ADYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIK
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCHHHHH
LLKAAFEDPDADIPWQQKKRFDDFDYGYALTVHKAQGSQWNEIVLFDESWAFKETRQRWL
HHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC
>Mature Secondary Structure
MEFSPQQDEALQAVARWLQAGKPQLFRLFGYAGTGKTTLARYFAEHVDGQVQFAAFTGKA
CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCHH
AQVLRSKGAVNARTIHSLIYRPKGEESVEDEVTGKTSMSPTFSLNRQSPISRAKLVVIDE
HHHHHHCCCCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCEECCCCCCCCCEEEEEEEC
CSMVDEQLGRDLMSFGTPILVLGDPGQLPPISGGGFFTDHEPDFLLTEIHRQARDNPILR
HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LALDVREGREFMRGDYGTAQVIGKEDVTQELVLKADQVLVGTNRTRRRYNQRLRELKGFN
EEEEHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCCC
ADYPQAGDKLVCLRNDPAKGLLNGSLWKVMTSSRETVKPGINLLVSPEEDDPDRGVAKIK
CCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEECCCCCCCCCCHHHHH
LLKAAFEDPDADIPWQQKKRFDDFDYGYALTVHKAQGSQWNEIVLFDESWAFKETRQRWL
HHHHHHCCCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEECCCCCHHHHHHHHH
YTAITRAAERLTIVR
HHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]