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The map label for this gene is ydeP [H]

Identifier: 13471441

GI number: 13471441

Start: 1178588

End: 1178998

Strand: Reverse

Name: ydeP [H]

Synonym: mll1412

Alternate gene names: 13471441

Gene position: 1178998-1178588 (Counterclockwise)

Preceding gene: 13471443

Following gene: 13471440

Centisome position: 16.76

GC content: 63.26

Gene sequence:

>411_bases
ATGGACAGCCGGATCGTCAATCTGAGATCCAAACTCGACGTCTACAAGGCCATGACCGGCGGCGGAAACCTTGCCGATTG
CCCGGTCCGCGAGGTCATCCAGGGGCTCAACGGCAAATGGAGTTCGCTGCTGATGGCGGCGCTGGCCGAGCAGCCCTATC
GCTTCGGGGAATTGCGGCGGCTGGTGCCCGACATCTCGCAGCGCATGCTGACCCAGACGCTCCACGACCTGCAGCGCGAC
GGCTATGTGCGTCGCGAAGTGTTCCCGACCAAGCCGCCCAGCGTCGAATACAGCCTCACCGATCTCGGACGCTCTATGTT
CGGCGCCCTGCATCATCTCATCCAATGGGCCGAACTCAACCACGATGCGGTGCGCGAGGCACGTGCCGGTTTCGACGCAG
CGCAGACTTGA

Upstream 100 bases:

>100_bases
TACATTGGTCTCAAAAAGAGACCAGCGCTAAAATAGGAATTGACCCGGCGCCGTAAAGAAGGCAGTTTTTCGGGAGGTAG
GCACATGCAGGGAACCAGCC

Downstream 100 bases:

>100_bases
GCGGCCGGGCAGCGTCCGGGGCAGCGACTTGATTTCATCCGGCGGCTGAAGGATTGTCCCGGCCAGTTCGGCTTGGGGGC
ATCGGCATTTCCTACGACAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 136; Mature: 136

Protein sequence:

>136_residues
MDSRIVNLRSKLDVYKAMTGGGNLADCPVREVIQGLNGKWSSLLMAALAEQPYRFGELRRLVPDISQRMLTQTLHDLQRD
GYVRREVFPTKPPSVEYSLTDLGRSMFGALHHLIQWAELNHDAVREARAGFDAAQT

Sequences:

>Translated_136_residues
MDSRIVNLRSKLDVYKAMTGGGNLADCPVREVIQGLNGKWSSLLMAALAEQPYRFGELRRLVPDISQRMLTQTLHDLQRD
GYVRREVFPTKPPSVEYSLTDLGRSMFGALHHLIQWAELNHDAVREARAGFDAAQT
>Mature_136_residues
MDSRIVNLRSKLDVYKAMTGGGNLADCPVREVIQGLNGKWSSLLMAALAEQPYRFGELRRLVPDISQRMLTQTLHDLQRD
GYVRREVFPTKPPSVEYSLTDLGRSMFGALHHLIQWAELNHDAVREARAGFDAAQT

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=125, Percent_Identity=38.4, Blast_Score=93, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 15354; Mature: 15354

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSRIVNLRSKLDVYKAMTGGGNLADCPVREVIQGLNGKWSSLLMAALAEQPYRFGELRR
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHH
LVPDISQRMLTQTLHDLQRDGYVRREVFPTKPPSVEYSLTDLGRSMFGALHHLIQWAELN
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HDAVREARAGFDAAQT
HHHHHHHHHCCCCCCC
>Mature Secondary Structure
MDSRIVNLRSKLDVYKAMTGGGNLADCPVREVIQGLNGKWSSLLMAALAEQPYRFGELRR
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHH
LVPDISQRMLTQTLHDLQRDGYVRREVFPTKPPSVEYSLTDLGRSMFGALHHLIQWAELN
HHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
HDAVREARAGFDAAQT
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]