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The map label for this gene is ybbK [C]

Identifier: 13471254

GI number: 13471254

Start: 985993

End: 987135

Strand: Direct

Name: ybbK [C]

Synonym: mlr1172

Alternate gene names: 13471254

Gene position: 985993-987135 (Clockwise)

Preceding gene: 13471252

Following gene: 161621453

Centisome position: 14.01

GC content: 64.3

Gene sequence:

>1143_bases
ATGACTGTTCTCGATAAGGTTCTTGGACGCGAGCGCGTCCTCGTAAGGGAAAACGAACGTGCCCTCACCCTCTACAAGGG
TGAGATCAAGGCCGTCCTGATGCCGGGCGAGCACTGGCTCGCCAACCGGCGCGGCAGCCTGGAAGCGTCACGGCACGACC
TGAAGAACCCGGAATTCGTTTCGGCATACGAGAAGGCGTTGTTCGACAAGCTCCCGGATGTGGCCGCGCGTCATTTCACC
GTCGTTCGCACCGGGCGCACGGATGTCGCCATCATCGAGCGTGACGGAAACCTGCACGCCGTTCTGGCGCCGGACCGCAA
GCTCGTGCTGTGGACCGATGCCGGCCCGTGGACGGTGAAGACGGTCGACACCTCGGAGGATCTCGCCATCGATCCGGCAG
TCATGCGCCGGCTCGGCCTGGCCCGGAAGGCGGAGTTGATGTCGGTCCATCCGGTCGTCGACGGCCAGGCGGGGCTGCTG
TTCGTCGACGGTGTCCTGGTCCGGACATTGACGGCGGGCGTGCATGGCTTCTGGAACGTCGGACGCATGGTGCAGGTGAA
GGTCGTCGACCTCAAGCGTCAGTCGCTCGACGTCGCCGGGCAGGAAGTGCTGACAAAGGATCGCGTGACGATCCGCGTCA
ACATCGCAGCCGAATACCGGGTCGTCGACCCGGTCAAGGCGGTGAGCGCCGTGAAGGACTTCTCCGAAGCCCTGTATCGC
GCCCTGCAGTACGCCTTCCGCAAGACGCTGGGCGCGCTGACGCTCGACCAAATCCTCGAAAAGAAGGTGACGGTCGACGA
GGAAGCGGCGGCCAAGGTCCGTGCCGACATGGCCGAGATCGGTGTCGAGGTCAGCGATATCGCCCTCAAGGATGTGATCC
TGCCGGGCGAGATGCGCGAGATCCTCAACCAGGTGGTCTCGGCCGAAAAGCAGGCCGAGGCCAACATCATCCGTCGGCGC
GAGGAGACGAACGCCACGCGTTCCCTGCTCAACACGGCCAGGGTGATGGCGGAGAACCCGGTGATGCTGCGGCTGAAGGA
GCTCGAGGCTCTGGAAACCATCGCCGGCAAGGTCGAGCGGCTGACCGTCCACAACGGAACGGGCGGACTCCTGAACGACC
TGGTCAAGCTCCGTGACAGCTGA

Upstream 100 bases:

>100_bases
ATCATTCGTGCCCGGAAGACGATGCGAAACGAGAAACGAAGGGAAGATCGACGCATGAGTTGACGCCTCGCATGGGGCCA
TGCCCGACAGGAGTAAGACA

Downstream 100 bases:

>100_bases
TGCATGTCGCCCAAAAGTGGTTCCCGGTTTTGGGAAAACGACGTGCATCGAAACAACGGCTAACCTGACGTAATGGGAAG
GGCCGCCGGGTTGACCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 380; Mature: 379

Protein sequence:

>380_residues
MTVLDKVLGRERVLVRENERALTLYKGEIKAVLMPGEHWLANRRGSLEASRHDLKNPEFVSAYEKALFDKLPDVAARHFT
VVRTGRTDVAIIERDGNLHAVLAPDRKLVLWTDAGPWTVKTVDTSEDLAIDPAVMRRLGLARKAELMSVHPVVDGQAGLL
FVDGVLVRTLTAGVHGFWNVGRMVQVKVVDLKRQSLDVAGQEVLTKDRVTIRVNIAAEYRVVDPVKAVSAVKDFSEALYR
ALQYAFRKTLGALTLDQILEKKVTVDEEAAAKVRADMAEIGVEVSDIALKDVILPGEMREILNQVVSAEKQAEANIIRRR
EETNATRSLLNTARVMAENPVMLRLKELEALETIAGKVERLTVHNGTGGLLNDLVKLRDS

Sequences:

>Translated_380_residues
MTVLDKVLGRERVLVRENERALTLYKGEIKAVLMPGEHWLANRRGSLEASRHDLKNPEFVSAYEKALFDKLPDVAARHFT
VVRTGRTDVAIIERDGNLHAVLAPDRKLVLWTDAGPWTVKTVDTSEDLAIDPAVMRRLGLARKAELMSVHPVVDGQAGLL
FVDGVLVRTLTAGVHGFWNVGRMVQVKVVDLKRQSLDVAGQEVLTKDRVTIRVNIAAEYRVVDPVKAVSAVKDFSEALYR
ALQYAFRKTLGALTLDQILEKKVTVDEEAAAKVRADMAEIGVEVSDIALKDVILPGEMREILNQVVSAEKQAEANIIRRR
EETNATRSLLNTARVMAENPVMLRLKELEALETIAGKVERLTVHNGTGGLLNDLVKLRDS
>Mature_379_residues
TVLDKVLGRERVLVRENERALTLYKGEIKAVLMPGEHWLANRRGSLEASRHDLKNPEFVSAYEKALFDKLPDVAARHFTV
VRTGRTDVAIIERDGNLHAVLAPDRKLVLWTDAGPWTVKTVDTSEDLAIDPAVMRRLGLARKAELMSVHPVVDGQAGLLF
VDGVLVRTLTAGVHGFWNVGRMVQVKVVDLKRQSLDVAGQEVLTKDRVTIRVNIAAEYRVVDPVKAVSAVKDFSEALYRA
LQYAFRKTLGALTLDQILEKKVTVDEEAAAKVRADMAEIGVEVSDIALKDVILPGEMREILNQVVSAEKQAEANIIRRRE
ETNATRSLLNTARVMAENPVMLRLKELEALETIAGKVERLTVHNGTGGLLNDLVKLRDS

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI221316744, Length=171, Percent_Identity=33.3333333333333, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI21686995, Length=196, Percent_Identity=31.1224489795918, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI38016911, Length=173, Percent_Identity=32.9479768786127, Blast_Score=79, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17569497, Length=170, Percent_Identity=28.2352941176471, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI71989948, Length=212, Percent_Identity=28.3018867924528, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17570161, Length=179, Percent_Identity=30.1675977653631, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI193210507, Length=179, Percent_Identity=30.1675977653631, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71987621, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25153583, Length=212, Percent_Identity=27.3584905660377, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71987612, Length=212, Percent_Identity=27.3584905660377, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI32566490, Length=167, Percent_Identity=29.940119760479, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17569499, Length=181, Percent_Identity=28.7292817679558, Blast_Score=72, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17570459, Length=214, Percent_Identity=26.1682242990654, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71989955, Length=153, Percent_Identity=28.7581699346405, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17569493, Length=173, Percent_Identity=27.7456647398844, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI193209764, Length=212, Percent_Identity=25.4716981132075, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI45556022, Length=167, Percent_Identity=30.5389221556886, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21356845, Length=169, Percent_Identity=30.1775147928994, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281365664, Length=169, Percent_Identity=29.585798816568, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281361631, Length=169, Percent_Identity=30.7692307692308, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI281361633, Length=169, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24657857, Length=169, Percent_Identity=29.585798816568, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI62484448, Length=169, Percent_Identity=29.585798816568, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI62484274, Length=169, Percent_Identity=29.585798816568, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI281361635, Length=161, Percent_Identity=31.055900621118, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI18860517, Length=191, Percent_Identity=28.2722513089005, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28573263, Length=189, Percent_Identity=25.9259259259259, Blast_Score=73, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 42168; Mature: 42037

Theoretical pI: Translated: 8.77; Mature: 8.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVLDKVLGRERVLVRENERALTLYKGEIKAVLMPGEHWLANRRGSLEASRHDLKNPEFV
CCHHHHHCCCCEEEEECCCCEEEEEECCEEEEEECCHHHHCCCCCCCCHHHHHCCCCHHH
SAYEKALFDKLPDVAARHFTVVRTGRTDVAIIERDGNLHAVLAPDRKLVLWTDAGPWTVK
HHHHHHHHHHCHHHHHHEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEE
TVDTSEDLAIDPAVMRRLGLARKAELMSVHPVVDGQAGLLFVDGVLVRTLTAGVHGFWNV
EECCCCCCEECHHHHHHHCCHHHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCC
GRMVQVKVVDLKRQSLDVAGQEVLTKDRVTIRVNIAAEYRVVDPVKAVSAVKDFSEALYR
CCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHH
ALQYAFRKTLGALTLDQILEKKVTVDEEAAAKVRADMAEIGVEVSDIALKDVILPGEMRE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCHHHHH
ILNQVVSAEKQAEANIIRRREETNATRSLLNTARVMAENPVMLRLKELEALETIAGKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCEEE
LTVHNGTGGLLNDLVKLRDS
EEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure 
TVLDKVLGRERVLVRENERALTLYKGEIKAVLMPGEHWLANRRGSLEASRHDLKNPEFV
CHHHHHCCCCEEEEECCCCEEEEEECCEEEEEECCHHHHCCCCCCCCHHHHHCCCCHHH
SAYEKALFDKLPDVAARHFTVVRTGRTDVAIIERDGNLHAVLAPDRKLVLWTDAGPWTVK
HHHHHHHHHHCHHHHHHEEEEEEECCCCEEEEEECCCEEEEECCCCEEEEEECCCCEEEE
TVDTSEDLAIDPAVMRRLGLARKAELMSVHPVVDGQAGLLFVDGVLVRTLTAGVHGFWNV
EECCCCCCEECHHHHHHHCCHHHHHHEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHHCC
GRMVQVKVVDLKRQSLDVAGQEVLTKDRVTIRVNIAAEYRVVDPVKAVSAVKDFSEALYR
CCEEEEEEEECHHHHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHHHH
ALQYAFRKTLGALTLDQILEKKVTVDEEAAAKVRADMAEIGVEVSDIALKDVILPGEMRE
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHEECCHHHHH
ILNQVVSAEKQAEANIIRRREETNATRSLLNTARVMAENPVMLRLKELEALETIAGKVER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHCCEEE
LTVHNGTGGLLNDLVKLRDS
EEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]