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The map label for this gene is ydiP [C]

Identifier: 13470712

GI number: 13470712

Start: 360993

End: 361934

Strand: Reverse

Name: ydiP [C]

Synonym: mll0489

Alternate gene names: 13470712

Gene position: 361934-360993 (Counterclockwise)

Preceding gene: 13470713

Following gene: 13470710

Centisome position: 5.14

GC content: 56.16

Gene sequence:

>942_bases
ATGAAAGGGTCTACCGACCTAGAATCACGGCTGCCTTCCGCCGGCGCTTATGGCGATCGATTTGCGAGCTATTTCAAGCT
TGCAAAGGCTAGCGTTTTTAAAACAGGCTCGCTGCGTACTGGAGAAATTGCTTACACCGAAACGTCCGGATACTGCCATA
AGCCCGAGCCTAGCGTACCTGTTCCCCCGGAAGATGCGTTTCTCGTCCAAACGCAGCTACAGGACTATCCCAACCATATA
TCATGGGAGGACGGACGGCCCGGCATAGTAGGAACGCTTCGGGCGGGACACACCATCCTCCGCGACCTCCAGCGAAAGCC
CAACGCTATCATAATGGGGCCGCATCACACGGTTCATTTCTACATCCCTCGCGCTACTTTCAACACGGTGGCCGAAGACC
TAGAAGCGCGATCAATCAGCGAGCTTGCCTATGTCCCCGCGCAGCCCATCGATGACGACGTCATTCGCGGGCTCATCGGT
ACCGTGCGTGCGGCAATTAAGGCGCCAGAGGAAACGAACCGACTTTTTCTTGACCATCTGATGATGGCGGCCGCAGTTCA
TTTGGCGCAAACTTATGGCGGGCTAAAGCCGCGATCCCTGCAGCATCGTGGCGGGTTGGCGCCGTGGCAGGCACGATTGG
CAATCGAGCTGCTCGAGGGTGACCTTACAGGCCAGTTGCCACTAAAAGACGTGGCAGCGGCGTGTAAATTGTCAGTGAGC
TATTTTTCGAAGGCTTTTTGCAAGACCACCGGCCTGGCGCCGCATCAATGGCTTCTGTACCGCCGCGTTGAACGAGCTAA
GTCGGCGATGATTAACGAAAAAACCACTCTCGCGGAAGTGGCTCTGAGTTGTGGTTTTTCGGACCAAAGCCATTTCACGC
GCGTCTTTGTGCGTCTCGTAGGGACCAGCCCAGCCACATGGCGGCGAGCGCGAAATCTATAG

Upstream 100 bases:

>100_bases
AACGGGACGTTGGTGCTCATAATGCGACGGAACCTAGTGCAGTGCATTTTTGGAGCATGGATCCTTCAGGGCATCCTCAA
ATTGCAGGCGCGCATCCACC

Downstream 100 bases:

>100_bases
GTCGCCGAGCGCGTACTCAAACGCGCTCGGCAATGATGAGACGCCAGCTGAAGCGGTGTCTAGGCCGCCAATTCGCGGGC
GATTCGCTGAGTGAGAGCAG

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Protein; AraC-Family Transcriptional Regulator; AraC Family Regulatory Protein; Transcriptional Regulatory Protein; AraC Family Transcription Regulator Protein; Transcription Regulator Protein; Transcriptional Regulator AraC; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC-Type; Helix-Turn-Helix AraC Type; AraC-Type Trancriptional Regulator; Transcriptional Regulator Protein AraC Family; AraC Family Helix-Turn-Helix Transcriptional Regulator; Transcription Regulator; Transcriptional Activator; Transcription Regulator AraC Family; AraC Family Transcription Regulator; Xyls/AraC-Type Transcriptional Activator; HTH-Type Transcriptional Regulator ChbR

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKGSTDLESRLPSAGAYGDRFASYFKLAKASVFKTGSLRTGEIAYTETSGYCHKPEPSVPVPPEDAFLVQTQLQDYPNHI
SWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPRATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIG
TVRAAIKAPEETNRLFLDHLMMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVS
YFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTSPATWRRARNL

Sequences:

>Translated_313_residues
MKGSTDLESRLPSAGAYGDRFASYFKLAKASVFKTGSLRTGEIAYTETSGYCHKPEPSVPVPPEDAFLVQTQLQDYPNHI
SWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPRATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIG
TVRAAIKAPEETNRLFLDHLMMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVS
YFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTSPATWRRARNL
>Mature_313_residues
MKGSTDLESRLPSAGAYGDRFASYFKLAKASVFKTGSLRTGEIAYTETSGYCHKPEPSVPVPPEDAFLVQTQLQDYPNHI
SWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHFYIPRATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIG
TVRAAIKAPEETNRLFLDHLMMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVS
YFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLVGTSPATWRRARNL

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34553; Mature: 34553

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGSTDLESRLPSAGAYGDRFASYFKLAKASVFKTGSLRTGEIAYTETSGYCHKPEPSVP
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC
VPPEDAFLVQTQLQDYPNHISWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHF
CCCCCCEEEHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECCCCEEEE
YIPRATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIGTVRAAIKAPEETNRLFLDHL
EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVS
HHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
YFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
GTSPATWRRARNL
CCCCHHHHHHCCC
>Mature Secondary Structure
MKGSTDLESRLPSAGAYGDRFASYFKLAKASVFKTGSLRTGEIAYTETSGYCHKPEPSVP
CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCC
VPPEDAFLVQTQLQDYPNHISWEDGRPGIVGTLRAGHTILRDLQRKPNAIIMGPHHTVHF
CCCCCCEEEHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEECCCCEEEE
YIPRATFNTVAEDLEARSISELAYVPAQPIDDDVIRGLIGTVRAAIKAPEETNRLFLDHL
EECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
MMAAAVHLAQTYGGLKPRSLQHRGGLAPWQARLAIELLEGDLTGQLPLKDVAAACKLSVS
HHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
YFSKAFCKTTGLAPHQWLLYRRVERAKSAMINEKTTLAEVALSCGFSDQSHFTRVFVRLV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHH
GTSPATWRRARNL
CCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA