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The map label for this gene is rlpA [H]

Identifier: 13470656

GI number: 13470656

Start: 308589

End: 309812

Strand: Reverse

Name: rlpA [H]

Synonym: mll0427

Alternate gene names: 13470656

Gene position: 309812-308589 (Counterclockwise)

Preceding gene: 13470657

Following gene: 13470655

Centisome position: 4.4

GC content: 64.54

Gene sequence:

>1224_bases
ATGCAGGCTACGACGCGCCCGCGTCTTCGTCGCGCTTCCACGCTCACGCTGTTGGCTGCTTCGGCTGCCTTGCTGGCGGC
TTGCGCGTCGCAGCCTGAGCCGAGGGCGATGGTCAATCCCAAACATCGCTCCAAGGAATATTTCGCCGAAACCGAATATG
GCGTGAAGGCGAGCCCGCGCGTCAACTTCATGCGGCGCGGAGGCGGTCGGGACCAACTCGGCAAGCCTTACCAGGTGCGC
GGCAAATGGTATTATCCCAAGGAAGATCGGCACTACGCCAAGGTTGGCCTGGCCTCGTGGTATGGCGACGCCTTCCATGG
CCGGCTGACCGCCAATGGCGAAGTCTACGACATGACGCATCTGACCGCCGCGCATCCGACCATGCCGCTGCCGAGCTATG
CCCGTGTCACCAACCTCGAAACCGGCAGTTCGGTCATCGTGCGCGTCAACGACCGGGGGCCCTATCATGAGGGCCGCATT
ATCGACGTCTCGGAGCGCGCGGCGCAGATGCTCGACTACGACAAGGTCGGCACCGCGAAGGTCAAGGTCGAATATGTCGG
CCGCGCGCCGCTCGATGGCAATGACGACCAGTATCTGATGGCGTCCTACCATCCAGGCAACAGGATTCCGGATCCGTCGG
ACGGCCTGCCAACCGGCGTCATGGTGGCCATGAACGGACCGTCGCCAAGCGTGCCGGTAGGCGCGGCCGCCGTGCCGTTC
CCTGGTCAGCTGACGAATTCCGGCGAGGCCGCGCAGCCGTCTTTGTCGGCACAGGCGCCGGCTTTCGGCGATCTGGCACT
GCCCGATTTCGGACCGATCGTTCCAGAGCGGCCGGAAATCGGCCTGCCGCCGCAGTCGCCGTTCGCGGTGGCCTCGCTGT
CCTATGCGGATGAACGCGTGCAGCGCGCCGATGTCTTTGCCGCGCTGGACGATAGCGGCATGTCGCCCGCCGACATCTTG
CGGTCGTGGAAAAAATCCAATCCGCAAGCATCGCCGTCCAATGCCGACTATGTCGCTGCCGGCACGTTCGACGACGCCGC
CGAAGCCAAGCGCGTGGCGTCTGCACTTCAGCCCTTCGGCCGAACGGAAATCCAGCGTTCCGACCTCGACGGCAATGACT
GGTATGCGGTCAATCTCTACCCGAATGGCCATGGCGGCCTGGACGAGTTGCTGCAGGCGGCATGGTCGCATGGCGCACCC
GATGCGCTGGCTGTGCGCAACTGA

Upstream 100 bases:

>100_bases
CGGGGTTCAAGGCGTCGTTGGCATTGTCGAGTGAGTGCTTTGGCTCCTCTGCTGTTCAAACGACGGCTTCTTGATTGAGA
CTGTAGGGGATTTCGGGACA

Downstream 100 bases:

>100_bases
TCTATTTTGACCGGGCGGTTGATCCGGCGGAAAAAACCCTGATAGCTTGGCTGTGCCAAAACCGGCAAACGGGTCGAGAT
TTCATGCAGTTGCGCGCCTT

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQATTRPRLRRASTLTLLAASAALLAACASQPEPRAMVNPKHRSKEYFAETEYGVKASPRVNFMRRGGGRDQLGKPYQVR
GKWYYPKEDRHYAKVGLASWYGDAFHGRLTANGEVYDMTHLTAAHPTMPLPSYARVTNLETGSSVIVRVNDRGPYHEGRI
IDVSERAAQMLDYDKVGTAKVKVEYVGRAPLDGNDDQYLMASYHPGNRIPDPSDGLPTGVMVAMNGPSPSVPVGAAAVPF
PGQLTNSGEAAQPSLSAQAPAFGDLALPDFGPIVPERPEIGLPPQSPFAVASLSYADERVQRADVFAALDDSGMSPADIL
RSWKKSNPQASPSNADYVAAGTFDDAAEAKRVASALQPFGRTEIQRSDLDGNDWYAVNLYPNGHGGLDELLQAAWSHGAP
DALAVRN

Sequences:

>Translated_407_residues
MQATTRPRLRRASTLTLLAASAALLAACASQPEPRAMVNPKHRSKEYFAETEYGVKASPRVNFMRRGGGRDQLGKPYQVR
GKWYYPKEDRHYAKVGLASWYGDAFHGRLTANGEVYDMTHLTAAHPTMPLPSYARVTNLETGSSVIVRVNDRGPYHEGRI
IDVSERAAQMLDYDKVGTAKVKVEYVGRAPLDGNDDQYLMASYHPGNRIPDPSDGLPTGVMVAMNGPSPSVPVGAAAVPF
PGQLTNSGEAAQPSLSAQAPAFGDLALPDFGPIVPERPEIGLPPQSPFAVASLSYADERVQRADVFAALDDSGMSPADIL
RSWKKSNPQASPSNADYVAAGTFDDAAEAKRVASALQPFGRTEIQRSDLDGNDWYAVNLYPNGHGGLDELLQAAWSHGAP
DALAVRN
>Mature_407_residues
MQATTRPRLRRASTLTLLAASAALLAACASQPEPRAMVNPKHRSKEYFAETEYGVKASPRVNFMRRGGGRDQLGKPYQVR
GKWYYPKEDRHYAKVGLASWYGDAFHGRLTANGEVYDMTHLTAAHPTMPLPSYARVTNLETGSSVIVRVNDRGPYHEGRI
IDVSERAAQMLDYDKVGTAKVKVEYVGRAPLDGNDDQYLMASYHPGNRIPDPSDGLPTGVMVAMNGPSPSVPVGAAAVPF
PGQLTNSGEAAQPSLSAQAPAFGDLALPDFGPIVPERPEIGLPPQSPFAVASLSYADERVQRADVFAALDDSGMSPADIL
RSWKKSNPQASPSNADYVAAGTFDDAAEAKRVASALQPFGRTEIQRSDLDGNDWYAVNLYPNGHGGLDELLQAAWSHGAP
DALAVRN

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=170, Percent_Identity=36.4705882352941, Blast_Score=101, Evalue=8e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 43846; Mature: 43846

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQATTRPRLRRASTLTLLAASAALLAACASQPEPRAMVNPKHRSKEYFAETEYGVKASPR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
VNFMRRGGGRDQLGKPYQVRGKWYYPKEDRHYAKVGLASWYGDAFHGRLTANGEVYDMTH
CHHHHCCCCCCCCCCCEEECCEEECCCCCCCCEEEEHHHHCCCCCCCEEECCCEEEEEEE
LTAAHPTMPLPSYARVTNLETGSSVIVRVNDRGPYHEGRIIDVSERAAQMLDYDKVGTAK
EEECCCCCCCCCCHHEEECCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEE
VKVEYVGRAPLDGNDDQYLMASYHPGNRIPDPSDGLPTGVMVAMNGPSPSVPVGAAAVPF
EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
PGQLTNSGEAAQPSLSAQAPAFGDLALPDFGPIVPERPEIGLPPQSPFAVASLSYADERV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH
QRADVFAALDDSGMSPADILRSWKKSNPQASPSNADYVAAGTFDDAAEAKRVASALQPFG
HHHHHEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
RTEIQRSDLDGNDWYAVNLYPNGHGGLDELLQAAWSHGAPDALAVRN
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MQATTRPRLRRASTLTLLAASAALLAACASQPEPRAMVNPKHRSKEYFAETEYGVKASPR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC
VNFMRRGGGRDQLGKPYQVRGKWYYPKEDRHYAKVGLASWYGDAFHGRLTANGEVYDMTH
CHHHHCCCCCCCCCCCEEECCEEECCCCCCCCEEEEHHHHCCCCCCCEEECCCEEEEEEE
LTAAHPTMPLPSYARVTNLETGSSVIVRVNDRGPYHEGRIIDVSERAAQMLDYDKVGTAK
EEECCCCCCCCCCHHEEECCCCCEEEEEECCCCCCCCCEEEEHHHHHHHHHCCCCCCCEE
VKVEYVGRAPLDGNDDQYLMASYHPGNRIPDPSDGLPTGVMVAMNGPSPSVPVGAAAVPF
EEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
PGQLTNSGEAAQPSLSAQAPAFGDLALPDFGPIVPERPEIGLPPQSPFAVASLSYADERV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHH
QRADVFAALDDSGMSPADILRSWKKSNPQASPSNADYVAAGTFDDAAEAKRVASALQPFG
HHHHHEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCC
RTEIQRSDLDGNDWYAVNLYPNGHGGLDELLQAAWSHGAPDALAVRN
CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]