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The map label for this gene is yiaD [H]

Identifier: 13470497

GI number: 13470497

Start: 154684

End: 155334

Strand: Direct

Name: yiaD [H]

Synonym: mlr0220

Alternate gene names: 13470497

Gene position: 154684-155334 (Clockwise)

Preceding gene: 13470496

Following gene: 13470498

Centisome position: 2.2

GC content: 64.06

Gene sequence:

>651_bases
ATGAAGAAGACCGTGCTCGTCGCCGTGGCGACGGCTTTGCTCGTGAGCGCATGCACCACCACCGATCCGTATACGGGCGA
CCAGAAGATTTCCAACACAGCCGCAGGTGCCGGTCTCGGCGCCCTGGCAGGTGCCAGCCTTGGTCTGCTTGCCGGCGGCA
ACGACCGCCGCAACGCGCTGATCGGCGCCGGCATCGGTGCGCTTGCCGGCGGCGCCATCGGCGCCACCATGGATCAGAAC
GAAGCTGAACTGCGCCGGCAGCTCGAGGGCACCGGTGTCAGCGTCACCCGCAGTGGCGACCAGATCATCCTCAACATGCC
GTCGGACATTACCTTCAATGTCGATCAGGATGCGGTGAAGCCCGGCTTCTATCCGGTGCTGAACTCGGTTGCGCTGGTGT
TGAAGAAATTCAAGCAGACCACGGTCGATGTTTTCGGTCACACCGATTCGACCGGCGGCGACCAGCACAATTTCGATCTG
TCGCAGCGCCGCGCACTCGCGGTTGCCAACTATCTGTCCGGTCAGGGCGTCGATCAGCGCCGCTTCGCCGTCACCGGCTT
CGGCAAGACGCGACCGATCGCATCCAATGCGACGGCTGCCGGCCGCGAGCAGAACCGTCGCGTCGAGATCCAGTTGTCGC
CGCTCACCTGA

Upstream 100 bases:

>100_bases
GCTTTTGCCGTTCCGTTTTTCGCCGCAATTCATGGTACAAGTCGCGGGAAGGGCTGATTTGGCGCCGTCGAAAAAGGCGC
GACTTGGAGAGGGACCATCT

Downstream 100 bases:

>100_bases
CGATCTGTACGGCAACGAATGTGAAAACGGCCCCAATGCGGGGCCGTTTTTGTGTGAGCGGCCATCGCACCCCTGCAGCT
GTCGCACCTAAGAATTAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MKKTVLVAVATALLVSACTTTDPYTGDQKISNTAAGAGLGALAGASLGLLAGGNDRRNALIGAGIGALAGGAIGATMDQN
EAELRRQLEGTGVSVTRSGDQIILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFGHTDSTGGDQHNFDL
SQRRALAVANYLSGQGVDQRRFAVTGFGKTRPIASNATAAGREQNRRVEIQLSPLT

Sequences:

>Translated_216_residues
MKKTVLVAVATALLVSACTTTDPYTGDQKISNTAAGAGLGALAGASLGLLAGGNDRRNALIGAGIGALAGGAIGATMDQN
EAELRRQLEGTGVSVTRSGDQIILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFGHTDSTGGDQHNFDL
SQRRALAVANYLSGQGVDQRRFAVTGFGKTRPIASNATAAGREQNRRVEIQLSPLT
>Mature_216_residues
MKKTVLVAVATALLVSACTTTDPYTGDQKISNTAAGAGLGALAGASLGLLAGGNDRRNALIGAGIGALAGGAIGATMDQN
EAELRRQLEGTGVSVTRSGDQIILNMPSDITFNVDQDAVKPGFYPVLNSVALVLKKFKQTTVDVFGHTDSTGGDQHNFDL
SQRRALAVANYLSGQGVDQRRFAVTGFGKTRPIASNATAAGREQNRRVEIQLSPLT

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=220, Percent_Identity=50.9090909090909, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI1786962, Length=98, Percent_Identity=31.6326530612245, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22402; Mature: 22402

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTVLVAVATALLVSACTTTDPYTGDQKISNTAAGAGLGALAGASLGLLAGGNDRRNAL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHCCCCHHHHHCCCEEEEECCCCCCCEE
IGAGIGALAGGAIGATMDQNEAELRRQLEGTGVSVTRSGDQIILNMPSDITFNVDQDAVK
EECCHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCHHHCC
PGFYPVLNSVALVLKKFKQTTVDVFGHTDSTGGDQHNFDLSQRRALAVANYLSGQGVDQR
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
RFAVTGFGKTRPIASNATAAGREQNRRVEIQLSPLT
EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKKTVLVAVATALLVSACTTTDPYTGDQKISNTAAGAGLGALAGASLGLLAGGNDRRNAL
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCHHCCCCHHHHHCCCEEEEECCCCCCCEE
IGAGIGALAGGAIGATMDQNEAELRRQLEGTGVSVTRSGDQIILNMPSDITFNVDQDAVK
EECCHHHHHCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCEEEEECCCCEEEECCHHHCC
PGFYPVLNSVALVLKKFKQTTVDVFGHTDSTGGDQHNFDLSQRRALAVANYLSGQGVDQR
CCHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
RFAVTGFGKTRPIASNATAAGREQNRRVEIQLSPLT
EEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]