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The map label for this gene is rimN [H]

Identifier: 134302710

GI number: 134302710

Start: 1793005

End: 1793547

Strand: Direct

Name: rimN [H]

Synonym: FTW_1909

Alternate gene names: 134302710

Gene position: 1793005-1793547 (Clockwise)

Preceding gene: 134302709

Following gene: 134302711

Centisome position: 94.44

GC content: 30.39

Gene sequence:

>543_bases
ATGCTTACAAAAGATTTGAATAAAATCATCGGTGAAATAACAGAAGATAATGTTGTTAGTATTCCTACAGATACAGTATA
TGGGCTAAGTTGCAACATCTCTAAAGCTGCCGTAGCAAAAGTTATAAACTTAAAAAAAAGGGATTCAAGCAAAGGTTTTA
TTATAATCTCACATGATCACAAGCATTTACTCAAGTATGCAGATACAACTAAACTATCTAATGAGCAAATCAATAAAATA
TCCTCTAAACAAGCTCAACCAACTACTTGGATAGTACCAGGTAAGAAAGATATTCAATGGTTAACTGGTGGTAAAACAAC
TATTGCCATACGCTTAGTAACAACTGAAATAGTAACTTATATTTGTGAAAATATTAATGATGCTATTATTTCAACTAGTG
CTAATATATCCGGCGAAGATTTCATTAATAATGCTAAATCGATAAGTAAAACCTTTGATAATATTTATGTACTAGAAACA
GAAGTTAGGTCTTCACAACCATCTAGAATTATTGATATAATTAGCGGACAGCAGTATAGATAA

Upstream 100 bases:

>100_bases
TAAACTTACTTAAACCTATAGGCTATTTGTAGTCTATAGGTTTTTTTATTTATAATAATGTAATAAAATATGCCTAATTT
AGTTACATGTTCGATAAAAT

Downstream 100 bases:

>100_bases
ATAACAATTGATATACGAAAAGTTTGATAAATAGCTTAAAATGTAATAGCATTATCAGTGTAAATTCTTTTGGATAAATG
GATTAGAAAGGAATAAAATG

Product: Sua5/YciO/YrdC family protein

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 180; Mature: 180

Protein sequence:

>180_residues
MLTKDLNKIIGEITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADTTKLSNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRSSQPSRIIDIISGQQYR

Sequences:

>Translated_180_residues
MLTKDLNKIIGEITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADTTKLSNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRSSQPSRIIDIISGQQYR
>Mature_180_residues
MLTKDLNKIIGEITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDHKHLLKYADTTKLSNEQINKI
SSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTYICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLET
EVRSSQPSRIIDIISGQQYR

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=173, Percent_Identity=30.635838150289, Blast_Score=97, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 19984; Mature: 19984

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKDLNKIIGEITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDH
CCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCH
KHLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTY
HHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCEEEEEEEHHHHHHHH
ICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLETEVRSSQPSRIIDIISGQQYR
HHHCCCHHEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCCC
>Mature Secondary Structure
MLTKDLNKIIGEITEDNVVSIPTDTVYGLSCNISKAAVAKVINLKKRDSSKGFIIISHDH
CCCHHHHHHHHCCCCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCH
KHLLKYADTTKLSNEQINKISSKQAQPTTWIVPGKKDIQWLTGGKTTIAIRLVTTEIVTY
HHHHHHHCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCEEEECCCEEEEEEEHHHHHHHH
ICENINDAIISTSANISGEDFINNAKSISKTFDNIYVLETEVRSSQPSRIIDIISGQQYR
HHHCCCHHEEECCCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA