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The map label for this gene is rbn [C]

Identifier: 134302683

GI number: 134302683

Start: 1759990

End: 1761177

Strand: Reverse

Name: rbn [C]

Synonym: FTW_1874

Alternate gene names: 134302683

Gene position: 1761177-1759990 (Counterclockwise)

Preceding gene: 134302690

Following gene: 134302682

Centisome position: 92.77

GC content: 29.29

Gene sequence:

>1188_bases
ATGTTTGATATCAGATTATACAAAAAATATTTGCTAATATTAAAAAACTATTGGATCTGGGTTTTTAAAGAATATCTCCG
TAAAGACTGTCCAACAGTAGCTGCTTCAATAACTCTTACGAGTTTGTTTGCTATCGTACCAGCTTTTTTCATTATAATAA
ATATTTTAGATGCTTTTAGTTCGCTTTCTGAGAGTCTACAAAATTTTCTTTTTGAAAACATGCTTCCAGAAACAGCAACA
ACTGTGCAGCAGTATATCACAAAGATTTCTCATAAAATGACTTCCTTACCTATTACATCAGTTATAGTCTTACTTGTGGT
AATCTTTTTGATGATAAAAAGGTTAGAAATTACCCTAAATAAAATCTTTTATGCAAATAGGCAACGTCCAATACTTCAAA
GTTTATTAGTATACTGGGCACTAATGACAATGGGACCACTACTGATGGGATTTGTATTTATTTCGAGTACTTATCTTATA
TCTATGGCGTGGTTTGTCAAAGATATTGGAATGGAGCAATATCTCTTAAGTGGTTTATCGCTTATTTTCTTAACTGCGGG
CTTTTTTGTTGTTTACAAGATATTACCTAATACAAGGATTAATTCAAAAATTGCCTTATTAGCAGCGTTTCTAGTCGCGA
TCGTCTTTACTCTTGCGAAGAAGATTTTTGCTTTATATATGTTTTATGTACCTACATATTCAGTTATTTATGGGTCATTA
TCATTAATACCAATATTTATTCTCTGGGTTTTTGTCACTTGGCAAATCACACTTTTAGGTGCGGTGATGATACGTGCGAT
GCAATATATGAAAGTAACTTTAAATTTTAAAAAGGAAGTAAAAAGAGATGATCTTAGTATAAGTGTTAATATGCTTAAAG
AGTTACATATTGCACAAAGAGAACTCAAGAATGGTATGAGTATTAACGATTTGTATCAAAAAACTTCAGTAGCAGATTAT
GACAAAATTAAAAAAAATCTTTATGCCTTAGAAAAAGCTAATATCATTAGGATTACAGTCCAAGATATTTGCTACTTAAA
TTGTGATGTTTTTGATATAAGCTTATATAAAATTTACTTGGCTTTTAATCCTACAATTAATTTTAAAACTAGTTCTATTA
GGAAAATTAATGTTATAAAATCTCAGCTATATAAACAACTTGATATAAAATTGTACGAGTGTTTTTAA

Upstream 100 bases:

>100_bases
CTGTGGCTTCAACTCCAATGGCTATAGTATGTGCCATTTTCTTTGTACTTCCACCTTGGCTGTAGTATAGTATTAGTATG
TTTTTCATCATCATTATTCT

Downstream 100 bases:

>100_bases
ATAAGGATTAGATTTACAATGTTGTTTGAGACTCTTGATTATTCTGCATTAGTTATAAATGTCTTATATACTATCTACTT
AGCTAGATTAAAAGTATGGT

Product: tRNA processing ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MFDIRLYKKYLLILKNYWIWVFKEYLRKDCPTVAASITLTSLFAIVPAFFIIINILDAFSSLSESLQNFLFENMLPETAT
TVQQYITKISHKMTSLPITSVIVLLVVIFLMIKRLEITLNKIFYANRQRPILQSLLVYWALMTMGPLLMGFVFISSTYLI
SMAWFVKDIGMEQYLLSGLSLIFLTAGFFVVYKILPNTRINSKIALLAAFLVAIVFTLAKKIFALYMFYVPTYSVIYGSL
SLIPIFILWVFVTWQITLLGAVMIRAMQYMKVTLNFKKEVKRDDLSISVNMLKELHIAQRELKNGMSINDLYQKTSVADY
DKIKKNLYALEKANIIRITVQDICYLNCDVFDISLYKIYLAFNPTINFKTSSIRKINVIKSQLYKQLDIKLYECF

Sequences:

>Translated_395_residues
MFDIRLYKKYLLILKNYWIWVFKEYLRKDCPTVAASITLTSLFAIVPAFFIIINILDAFSSLSESLQNFLFENMLPETAT
TVQQYITKISHKMTSLPITSVIVLLVVIFLMIKRLEITLNKIFYANRQRPILQSLLVYWALMTMGPLLMGFVFISSTYLI
SMAWFVKDIGMEQYLLSGLSLIFLTAGFFVVYKILPNTRINSKIALLAAFLVAIVFTLAKKIFALYMFYVPTYSVIYGSL
SLIPIFILWVFVTWQITLLGAVMIRAMQYMKVTLNFKKEVKRDDLSISVNMLKELHIAQRELKNGMSINDLYQKTSVADY
DKIKKNLYALEKANIIRITVQDICYLNCDVFDISLYKIYLAFNPTINFKTSSIRKINVIKSQLYKQLDIKLYECF
>Mature_395_residues
MFDIRLYKKYLLILKNYWIWVFKEYLRKDCPTVAASITLTSLFAIVPAFFIIINILDAFSSLSESLQNFLFENMLPETAT
TVQQYITKISHKMTSLPITSVIVLLVVIFLMIKRLEITLNKIFYANRQRPILQSLLVYWALMTMGPLLMGFVFISSTYLI
SMAWFVKDIGMEQYLLSGLSLIFLTAGFFVVYKILPNTRINSKIALLAAFLVAIVFTLAKKIFALYMFYVPTYSVIYGSL
SLIPIFILWVFVTWQITLLGAVMIRAMQYMKVTLNFKKEVKRDDLSISVNMLKELHIAQRELKNGMSINDLYQKTSVADY
DKIKKNLYALEKANIIRITVQDICYLNCDVFDISLYKIYLAFNPTINFKTSSIRKINVIKSQLYKQLDIKLYECF

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=280, Percent_Identity=33.5714285714286, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 45916; Mature: 45916

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIRLYKKYLLILKNYWIWVFKEYLRKDCPTVAASITLTSLFAIVPAFFIIINILDAFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLSESLQNFLFENMLPETATTVQQYITKISHKMTSLPITSVIVLLVVIFLMIKRLEITLN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KIFYANRQRPILQSLLVYWALMTMGPLLMGFVFISSTYLISMAWFVKDIGMEQYLLSGLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LIFLTAGFFVVYKILPNTRINSKIALLAAFLVAIVFTLAKKIFALYMFYVPTYSVIYGSL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPIFILWVFVTWQITLLGAVMIRAMQYMKVTLNFKKEVKRDDLSISVNMLKELHIAQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ELKNGMSINDLYQKTSVADYDKIKKNLYALEKANIIRITVQDICYLNCDVFDISLYKIYL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHHHEECCCEEEEEEEEEEE
AFNPTINFKTSSIRKINVIKSQLYKQLDIKLYECF
EECCEEECCCCCHHHHHHHHHHHHHHHCCCCEECC
>Mature Secondary Structure
MFDIRLYKKYLLILKNYWIWVFKEYLRKDCPTVAASITLTSLFAIVPAFFIIINILDAFS
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLSESLQNFLFENMLPETATTVQQYITKISHKMTSLPITSVIVLLVVIFLMIKRLEITLN
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
KIFYANRQRPILQSLLVYWALMTMGPLLMGFVFISSTYLISMAWFVKDIGMEQYLLSGLS
HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LIFLTAGFFVVYKILPNTRINSKIALLAAFLVAIVFTLAKKIFALYMFYVPTYSVIYGSL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIPIFILWVFVTWQITLLGAVMIRAMQYMKVTLNFKKEVKRDDLSISVNMLKELHIAQR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ELKNGMSINDLYQKTSVADYDKIKKNLYALEKANIIRITVQDICYLNCDVFDISLYKIYL
HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEHHHHHEECCCEEEEEEEEEEE
AFNPTINFKTSSIRKINVIKSQLYKQLDIKLYECF
EECCEEECCCCCHHHHHHHHHHHHHHHCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA