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The map label for this gene is ybgK [C]

Identifier: 134302654

GI number: 134302654

Start: 1726608

End: 1727420

Strand: Reverse

Name: ybgK [C]

Synonym: FTW_1839

Alternate gene names: 134302654

Gene position: 1727420-1726608 (Counterclockwise)

Preceding gene: 134302655

Following gene: 134302652

Centisome position: 90.99

GC content: 36.41

Gene sequence:

>813_bases
ATGCTAGATATTTTGTCAATAAAAGGTGGTTTAGTCTTTGCTGTTGCGCTACGTCAATATGGCTTACAAGATAAGGGGAT
ATCACCTCAAGGAGCGCAAGATCAGCTTAGTTTTATTACAGCGTATAATCTTGTTGGTAAACCTACTAATTTCCAAGCTG
TAGAAATGATCTATCCAGCAGAAATTACAGCTAACCAAGATGCTTTAGTTTGCCTATCTGGAGCTAGCTATCAAGATACT
TATATAGATGCCCATGAAAAAGTCAGCTATAACCAAGTTTTCATGCTTAACAAAGGACAGAAATTAGAGTTTAAAGGAAT
AAAGAAAGGTTTTCGTACAGTAGTTTTAGCAGTTAAAGCAGAGTCTGAAATACAAGACTTAGTAGCTAATACAAGATCAC
CACAGCTTGCAAGTTATATAAGCGAGACTTACCGCAATAACCTAATAAGAATACTTAAAGGTCCAGAGTACAATATCCTA
AAAGATAAGTCCTTTCTTGAAAACTCTTGGGCAATTTCAGTAAATTCTAGTCAGATGGGCTTGTCATTAGAGGGAGTTGC
TTTTGATACACAAAAAATTGAAATGATTTCCCAGCCTGTAACAGATGGCACAATACAATTAGCCCCAAGTGGTCCGATAG
TGTTGCTAAGACATCGTCAAACAGTTGGTGGCTATCCACGTATTGCCAATGTTATTGAAGCAGATATCAGCAAATTATCA
CAATATACACCGGGCTCTAAAATAAGATTTAAGTTAGTAAGTTTAGAAGAGGCGATAAGCGAAAATACTAGATTAAAGCA
ACTTACCGAGTAA

Upstream 100 bases:

>100_bases
GAGGAGATTGCTTTTAAATCTCAAACTATATGTATACATTCAGATAGTAGTATAGCCTTAGAGTTAGCACAAGAGTTGTA
TAAAAATAAAGGTCAAGCTT

Downstream 100 bases:

>100_bases
ATATTTTTAGTTTAATTTATCCACTACTAATCCTGTCTTAGGGTCTAAAATCAGTTTTGGTGTTTTTTGTTTTTTATTAA
AATCAAACATGTTTAAGATA

Product: hydrolase subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MLDILSIKGGLVFAVALRQYGLQDKGISPQGAQDQLSFITAYNLVGKPTNFQAVEMIYPAEITANQDALVCLSGASYQDT
YIDAHEKVSYNQVFMLNKGQKLEFKGIKKGFRTVVLAVKAESEIQDLVANTRSPQLASYISETYRNNLIRILKGPEYNIL
KDKSFLENSWAISVNSSQMGLSLEGVAFDTQKIEMISQPVTDGTIQLAPSGPIVLLRHRQTVGGYPRIANVIEADISKLS
QYTPGSKIRFKLVSLEEAISENTRLKQLTE

Sequences:

>Translated_270_residues
MLDILSIKGGLVFAVALRQYGLQDKGISPQGAQDQLSFITAYNLVGKPTNFQAVEMIYPAEITANQDALVCLSGASYQDT
YIDAHEKVSYNQVFMLNKGQKLEFKGIKKGFRTVVLAVKAESEIQDLVANTRSPQLASYISETYRNNLIRILKGPEYNIL
KDKSFLENSWAISVNSSQMGLSLEGVAFDTQKIEMISQPVTDGTIQLAPSGPIVLLRHRQTVGGYPRIANVIEADISKLS
QYTPGSKIRFKLVSLEEAISENTRLKQLTE
>Mature_270_residues
MLDILSIKGGLVFAVALRQYGLQDKGISPQGAQDQLSFITAYNLVGKPTNFQAVEMIYPAEITANQDALVCLSGASYQDT
YIDAHEKVSYNQVFMLNKGQKLEFKGIKKGFRTVVLAVKAESEIQDLVANTRSPQLASYISETYRNNLIRILKGPEYNIL
KDKSFLENSWAISVNSSQMGLSLEGVAFDTQKIEMISQPVTDGTIQLAPSGPIVLLRHRQTVGGYPRIANVIEADISKLS
QYTPGSKIRFKLVSLEEAISENTRLKQLTE

Specific function: Unknown

COG id: COG1984

COG function: function code E; Allophanate hydrolase subunit 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786930, Length=276, Percent_Identity=29.7101449275362, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003778
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02626 AHS2 [H]

EC number: NA

Molecular weight: Translated: 29870; Mature: 29870

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDILSIKGGLVFAVALRQYGLQDKGISPQGAQDQLSFITAYNLVGKPTNFQAVEMIYPA
CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
EITANQDALVCLSGASYQDTYIDAHEKVSYNQVFMLNKGQKLEFKGIKKGFRTVVLAVKA
EECCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEECCCCEEEHHHHHHCCEEEEEEEEC
ESEIQDLVANTRSPQLASYISETYRNNLIRILKGPEYNILKDKSFLENSWAISVNSSQMG
HHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEECCCCCEECCCHHHCCCEEEEECCCCCC
LSLEGVAFDTQKIEMISQPVTDGTIQLAPSGPIVLLRHRQTVGGYPRIANVIEADISKLS
EEEECEEECHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
QYTPGSKIRFKLVSLEEAISENTRLKQLTE
HCCCCCCEEEEEEEHHHHHCCCCHHHHCCC
>Mature Secondary Structure
MLDILSIKGGLVFAVALRQYGLQDKGISPQGAQDQLSFITAYNLVGKPTNFQAVEMIYPA
CCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECC
EITANQDALVCLSGASYQDTYIDAHEKVSYNQVFMLNKGQKLEFKGIKKGFRTVVLAVKA
EECCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEEECCCCEEEHHHHHHCCEEEEEEEEC
ESEIQDLVANTRSPQLASYISETYRNNLIRILKGPEYNILKDKSFLENSWAISVNSSQMG
HHHHHHHHHCCCCCHHHHHHHHHHHCCEEEEEECCCCCEECCCHHHCCCEEEEECCCCCC
LSLEGVAFDTQKIEMISQPVTDGTIQLAPSGPIVLLRHRQTVGGYPRIANVIEADISKLS
EEEECEEECHHHHHHHHCCCCCCEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHH
QYTPGSKIRFKLVSLEEAISENTRLKQLTE
HCCCCCCEEEEEEEHHHHHCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]