Click here to switch to the map view.

The map label for this gene is secY [H]

Identifier: 134302566

GI number: 134302566

Start: 1644017

End: 1645342

Strand: Reverse

Name: secY [H]

Synonym: FTW_1738

Alternate gene names: 134302566

Gene position: 1645342-1644017 (Counterclockwise)

Preceding gene: 134302567

Following gene: 134302565

Centisome position: 86.67

GC content: 34.09

Gene sequence:

>1326_bases
ATGTCAAAGTATAATAGTGCTTCTGGTACAACAGGTGAATTAAAATCTAGACTGATTTTTGTAGTCATTGCTATCTTGGT
ATTTAGACTCGGAGTTTATATTCCTATACCAAATATAGATCCTACTAAGTTGGTAGAGATTATTTCAAATCAACACTCAT
CAGCCGGTGGTTTGATGAGTATGTTTAATATGTTCTCTGGTGGCGCTCTTACTCAAATGAGTATCTTTGCATTGGGTGTG
ATGCCTTATATTTCGGCATCAATTATTTTTCAGATGCTTTCAGCTGTATATCCAAAATTTATAGAGCTAAAAAAAGAAGG
TGAGTCTGGTCAAAAGAAAATCACTCAATATACAAGATATTTAACTCTTGCTTTGGCTATAGTACAATCATTTGGTATTG
TTGCATTTGTATTACATCAAGATGGTTTAGTAACTACAAATAATATGGCGTTATTTTATTTGACGACTATTGTTTCTGTT
ACAACGGGTAGTATGTTTTTGATGTGGCTAGGTGAGCAAATCACTGAAAGAGGTGTTGGAAATGGTATTTCACTACTAAT
CTTTTCAGGTATTGTTGCTAACTTGCCGTTTGAAATCTCAAACACATTATCACAAGCTAACCAGCATGTAATATCTTACT
TGTCTGTATGGGTGCTTTTAATTTTGCTACTATTAGTTATTGCATTTGTAGTATTTATGGAAAGTGCTCAGAGAAAAATT
ACAGTAAACTATGCTAAGAGACAGCAAGGTAGAAAAATGTTTGCTGCTCAGACTAGCCACTTGCCTCTAAAATTAAATAT
GGCTGGGGTAATTCCAGCAATTTTTGCATCATCAATATTGATGGTTCCTGGTGTATTACTTGGTTGGTTATCTAACTATA
ATTCACTTAGTTGGTTGGCAGATGTTGCAGAGATGCTGCAGCCAGGCAGTATAGTTTATACGGTAGTTTTTGCTGCGACA
ATTATCTTTTTCTGTTTCTTTTATACTTCTTTGGTATTAAATCCAAAAGAAACAGCAGATAATTTAAAGAAATCAGGCGC
TTATATTTCTGGTGTGAGACCTGGTGAGCAAACAGCTAAGTATATAGATGCAGTTATGACTAGATTAACTTTGGTTGGTT
CATTATATATCACAGCTATATGTTTATTACCAATTTTCGTAGTGAAGTTCTTTGCACAAGGATTATCATTTACATTTGGT
GGTACGTCTTTGCTGATCGTGGTAGTTGTGATGATGGACTTTATGGCTCAAGTTAGATCTCATATGATGTCAACACAATA
TGATTCTTTACTAAAAAAAGCAAATCTTAGTGGTAAGAGAAAATAG

Upstream 100 bases:

>100_bases
GAAATCCAAAAAGCTGTTAGCCTAAAAGGTATAGCTTGTACAAAAGGTGCAAAAGAAGCTATCGAAAAAGCTGGCGGTAA
AGTAGAGTAAGATTAAAGAT

Downstream 100 bases:

>100_bases
AGAAATATTTTTGGAGAAATATAATGAAAGTTAGAGCTTCAGTTAAAAAAATGTGTAGAAACTGTAAAGTTATCAAGCGC
AATAGAGTAGTTCGTGTGAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 440

Protein sequence:

>441_residues
MSKYNSASGTTGELKSRLIFVVIAILVFRLGVYIPIPNIDPTKLVEIISNQHSSAGGLMSMFNMFSGGALTQMSIFALGV
MPYISASIIFQMLSAVYPKFIELKKEGESGQKKITQYTRYLTLALAIVQSFGIVAFVLHQDGLVTTNNMALFYLTTIVSV
TTGSMFLMWLGEQITERGVGNGISLLIFSGIVANLPFEISNTLSQANQHVISYLSVWVLLILLLLVIAFVVFMESAQRKI
TVNYAKRQQGRKMFAAQTSHLPLKLNMAGVIPAIFASSILMVPGVLLGWLSNYNSLSWLADVAEMLQPGSIVYTVVFAAT
IIFFCFFYTSLVLNPKETADNLKKSGAYISGVRPGEQTAKYIDAVMTRLTLVGSLYITAICLLPIFVVKFFAQGLSFTFG
GTSLLIVVVVMMDFMAQVRSHMMSTQYDSLLKKANLSGKRK

Sequences:

>Translated_441_residues
MSKYNSASGTTGELKSRLIFVVIAILVFRLGVYIPIPNIDPTKLVEIISNQHSSAGGLMSMFNMFSGGALTQMSIFALGV
MPYISASIIFQMLSAVYPKFIELKKEGESGQKKITQYTRYLTLALAIVQSFGIVAFVLHQDGLVTTNNMALFYLTTIVSV
TTGSMFLMWLGEQITERGVGNGISLLIFSGIVANLPFEISNTLSQANQHVISYLSVWVLLILLLLVIAFVVFMESAQRKI
TVNYAKRQQGRKMFAAQTSHLPLKLNMAGVIPAIFASSILMVPGVLLGWLSNYNSLSWLADVAEMLQPGSIVYTVVFAAT
IIFFCFFYTSLVLNPKETADNLKKSGAYISGVRPGEQTAKYIDAVMTRLTLVGSLYITAICLLPIFVVKFFAQGLSFTFG
GTSLLIVVVVMMDFMAQVRSHMMSTQYDSLLKKANLSGKRK
>Mature_440_residues
SKYNSASGTTGELKSRLIFVVIAILVFRLGVYIPIPNIDPTKLVEIISNQHSSAGGLMSMFNMFSGGALTQMSIFALGVM
PYISASIIFQMLSAVYPKFIELKKEGESGQKKITQYTRYLTLALAIVQSFGIVAFVLHQDGLVTTNNMALFYLTTIVSVT
TGSMFLMWLGEQITERGVGNGISLLIFSGIVANLPFEISNTLSQANQHVISYLSVWVLLILLLLVIAFVVFMESAQRKIT
VNYAKRQQGRKMFAAQTSHLPLKLNMAGVIPAIFASSILMVPGVLLGWLSNYNSLSWLADVAEMLQPGSIVYTVVFAATI
IFFCFFYTSLVLNPKETADNLKKSGAYISGVRPGEQTAKYIDAVMTRLTLVGSLYITAICLLPIFVVKFFAQGLSFTFGG
TSLLIVVVVMMDFMAQVRSHMMSTQYDSLLKKANLSGKRK

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=438, Percent_Identity=59.3607305936073, Blast_Score=490, Evalue=1e-140,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48435; Mature: 48304

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKYNSASGTTGELKSRLIFVVIAILVFRLGVYIPIPNIDPTKLVEIISNQHSSAGGLMS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCCCHHHHH
MFNMFSGGALTQMSIFALGVMPYISASIIFQMLSAVYPKFIELKKEGESGQKKITQYTRY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LTLALAIVQSFGIVAFVLHQDGLVTTNNMALFYLTTIVSVTTGSMFLMWLGEQITERGVG
HHHHHHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NGISLLIFSGIVANLPFEISNTLSQANQHVISYLSVWVLLILLLLVIAFVVFMESAQRKI
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
TVNYAKRQQGRKMFAAQTSHLPLKLNMAGVIPAIFASSILMVPGVLLGWLSNYNSLSWLA
EHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DVAEMLQPGSIVYTVVFAATIIFFCFFYTSLVLNPKETADNLKKSGAYISGVRPGEQTAK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCHHHHH
YIDAVMTRLTLVGSLYITAICLLPIFVVKFFAQGLSFTFGGTSLLIVVVVMMDFMAQVRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
HMMSTQYDSLLKKANLSGKRK
HHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SKYNSASGTTGELKSRLIFVVIAILVFRLGVYIPIPNIDPTKLVEIISNQHSSAGGLMS
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCCCHHHHH
MFNMFSGGALTQMSIFALGVMPYISASIIFQMLSAVYPKFIELKKEGESGQKKITQYTRY
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
LTLALAIVQSFGIVAFVLHQDGLVTTNNMALFYLTTIVSVTTGSMFLMWLGEQITERGVG
HHHHHHHHHHHHHHEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NGISLLIFSGIVANLPFEISNTLSQANQHVISYLSVWVLLILLLLVIAFVVFMESAQRKI
CCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
TVNYAKRQQGRKMFAAQTSHLPLKLNMAGVIPAIFASSILMVPGVLLGWLSNYNSLSWLA
EHHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
DVAEMLQPGSIVYTVVFAATIIFFCFFYTSLVLNPKETADNLKKSGAYISGVRPGEQTAK
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCHHHHH
YIDAVMTRLTLVGSLYITAICLLPIFVVKFFAQGLSFTFGGTSLLIVVVVMMDFMAQVRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
HMMSTQYDSLLKKANLSGKRK
HHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]