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The map label for this gene is sohB [H]

Identifier: 134302463

GI number: 134302463

Start: 1515338

End: 1516354

Strand: Reverse

Name: sohB [H]

Synonym: FTW_1611

Alternate gene names: 134302463

Gene position: 1516354-1515338 (Counterclockwise)

Preceding gene: 134302464

Following gene: 134302462

Centisome position: 79.87

GC content: 33.73

Gene sequence:

>1017_bases
ATGTGGTATCAAAGTTTTATAGGTTTTGTATTTTTTGCTCTGAGTACTGTATTAGTTGTTGCTGCTATTGTGATTGTGAT
TGGGAGCTTTTTCTCATTATTAAGTAAGGCAAAACAAGAAGCTGCAAATCTGGCAAAAGGTAGGCTTGAAATAAATGAAG
TAGCAACTGAATATAAACACACTAAGCAACAGCTTTTAGAAAGTCTACTTGAGAAAAAAGAGTATAAAAAGTTTTTAAAG
GAGCAAAAAAAGCTAGATAAGCAAGATAAGCCAAAACAAAAAATTTTTGTTATCAATTTCAAGGGTGATATCGATGCCTC
TCAGGTTGAAAATCTGCGTAATGAAGTTTCAGCAATTTTAGCAGTAGCTAATACAGAAGATGAAATTATTGTTAGGATAG
ATAGTCCAGGTGGTGTTGTTAATGGCTATGGTTTCGCAGCAGCTCAACTAGAGCGTATTCGTCAGGCTGGGATAAACCTT
ACAGTGTGTATTGATCAAGTTGCTGCGAGTGGTGGCTATATGATGTCAGCTGTTGCTCATAAAATAATAGCCGCACCATT
CGCTATAGTTGGTTCTATAGGTGTTGTTGGGACTATTCCTAACATTAGAGAATTACTTGAGAAAAATGGTATAAATGTTG
AAATGCATACCTCTGGAGAATATAAGCGTACGTTAACTACAGTTGGTGTTAATACCGAAGAAGGTCGTAATAAGTTTAAG
CAAGATCTAGAGAGTATTCATCAGCTATTTAAAAAACATATTTTAGTCTATAGACCAAGTCTAGATATCGATAAAGTAGC
TACTGGTGAGTATTGGTTTGGTAAAGATGCACTTGAGCTAGGGTTGGTTGATAAAATTCAGACTTATGATGATTATCTAA
TTGACCTACTTAAAAAACAGCACAATGTATATGAAGTAAGTTATGTTATAAAAAAAGAAAAAGGATTCTTAAGGTCTAAA
TTTAGTATGCTTAAAAGAGCAATTACAAATCTCTTGTATGCACGTAAAATAATATAG

Upstream 100 bases:

>100_bases
GACTCTTTGCTAGAGATTCGGTCAAAAAAGCTAACATAAAAGGCGGCGCTGGTGAGTCATTACTCAAAACTCTAAGAACT
CATAGATAAGGTTGTAAAAT

Downstream 100 bases:

>100_bases
GATAAAAGTGTTATCTCTAACCACACATCAGCAATTAATAGATAATTTTCTTGAGCAAAAAGCTAAGCAAACGTTGCGTC
ATGCTTTTATCTTCAGAGTA

Product: putative periplasmic protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MWYQSFIGFVFFALSTVLVVAAIVIVIGSFFSLLSKAKQEAANLAKGRLEINEVATEYKHTKQQLLESLLEKKEYKKFLK
EQKKLDKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDEIIVRIDSPGGVVNGYGFAAAQLERIRQAGINL
TVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFK
QDLESIHQLFKKHILVYRPSLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDLLKKQHNVYEVSYVIKKEKGFLRSK
FSMLKRAITNLLYARKII

Sequences:

>Translated_338_residues
MWYQSFIGFVFFALSTVLVVAAIVIVIGSFFSLLSKAKQEAANLAKGRLEINEVATEYKHTKQQLLESLLEKKEYKKFLK
EQKKLDKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDEIIVRIDSPGGVVNGYGFAAAQLERIRQAGINL
TVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFK
QDLESIHQLFKKHILVYRPSLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDLLKKQHNVYEVSYVIKKEKGFLRSK
FSMLKRAITNLLYARKII
>Mature_338_residues
MWYQSFIGFVFFALSTVLVVAAIVIVIGSFFSLLSKAKQEAANLAKGRLEINEVATEYKHTKQQLLESLLEKKEYKKFLK
EQKKLDKQDKPKQKIFVINFKGDIDASQVENLRNEVSAILAVANTEDEIIVRIDSPGGVVNGYGFAAAQLERIRQAGINL
TVCIDQVAASGGYMMSAVAHKIIAAPFAIVGSIGVVGTIPNIRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFK
QDLESIHQLFKKHILVYRPSLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDLLKKQHNVYEVSYVIKKEKGFLRSK
FSMLKRAITNLLYARKII

Specific function: Possible protease [H]

COG id: COG0616

COG function: function code OU; Periplasmic serine proteases (ClpP class)

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S49 family [H]

Homologues:

Organism=Escherichia coli, GI1787527, Length=284, Percent_Identity=45.4225352112676, Blast_Score=267, Evalue=7e-73,
Organism=Escherichia coli, GI1788064, Length=198, Percent_Identity=31.8181818181818, Blast_Score=82, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002142
- InterPro:   IPR013703 [H]

Pfam domain/function: PF01343 Peptidase_S49; PF08496 Peptidase_S49_N [H]

EC number: 3.4.21.- [C]

Molecular weight: Translated: 38028; Mature: 38028

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWYQSFIGFVFFALSTVLVVAAIVIVIGSFFSLLSKAKQEAANLAKGRLEINEVATEYKH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
TKQQLLESLLEKKEYKKFLKEQKKLDKQDKPKQKIFVINFKGDIDASQVENLRNEVSAIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
AVANTEDEIIVRIDSPGGVVNGYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAH
HHCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEEHHHHHCCCCHHHHHHHH
KIIAAPFAIVGSIGVVGTIPNIRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFK
HHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCEEEEECCCCHHHHHEEECCCCHHHHHHHH
QDLESIHQLFKKHILVYRPSLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDLLKKQ
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HNVYEVSYVIKKEKGFLRSKFSMLKRAITNLLYARKII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MWYQSFIGFVFFALSTVLVVAAIVIVIGSFFSLLSKAKQEAANLAKGRLEINEVATEYKH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
TKQQLLESLLEKKEYKKFLKEQKKLDKQDKPKQKIFVINFKGDIDASQVENLRNEVSAIL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH
AVANTEDEIIVRIDSPGGVVNGYGFAAAQLERIRQAGINLTVCIDQVAASGGYMMSAVAH
HHCCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHCCCEEEEEHHHHHCCCCHHHHHHHH
KIIAAPFAIVGSIGVVGTIPNIRELLEKNGINVEMHTSGEYKRTLTTVGVNTEEGRNKFK
HHHHHHHHHHHCCCHHCCCHHHHHHHHHCCCEEEEECCCCHHHHHEEECCCCHHHHHHHH
QDLESIHQLFKKHILVYRPSLDIDKVATGEYWFGKDALELGLVDKIQTYDDYLIDLLKKQ
HHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HNVYEVSYVIKKEKGFLRSKFSMLKRAITNLLYARKII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]