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The map label for this gene is rdgC [H]

Identifier: 134302292

GI number: 134302292

Start: 1300567

End: 1301427

Strand: Reverse

Name: rdgC [H]

Synonym: FTW_1390

Alternate gene names: 134302292

Gene position: 1301427-1300567 (Counterclockwise)

Preceding gene: 134302294

Following gene: 134302291

Centisome position: 68.55

GC content: 29.73

Gene sequence:

>861_bases
ATGTTCTTTAAAAACCTTACAGCATTCAAAATCACAGATATTAATATAGATATATTTGAAGATTCTATGAATAAATTAGC
ATTTATACCTTGTAGTAATTCTCAGAAGTCTTCTAGAGGTTTTATAAATCCGTTTATAAAAGATGAAAATTGTCTTTTTA
AGTTTAATCATCTAGCTGCATTTTGTTTACTTACAGAAGAAAAAATCTTGTCTGCTCAAGTTATTAATCAACAAGCACAA
GAATATATAGAAGAGCTTGAGCTAACTAGATATGTAAGCAAAAAAGAAAAGACACAAATAAAAGAGGATATGCAGCAGAA
ACTTTTACCATTAGCATTTAGTAAGTTTAGAAAAACTTATGGTTACCTAGATCTAACAAATAACTATCTAGTAATTGATA
GTATTTCAGAAAAGCAGATTACAGAAATTTTGGATTTGTTGCATAGATGTGAAGCTAGGTTTGAACCTGTTATCAAAGAA
GAAACAGATATTCTAACAGAGTGGCTTGTAGATAATGCCTATCCCGTTGATATTGAGATTGCTGAAAAATGTAAGCTTAC
TAGTGCTATTGGTGATAGTATTGCAAACATATCATGCCAAGGTAGCTCAATGTTAAACGATAATATCAAATCATTTATTG
ATAGTGGCGGTTATATTACTGAGATTGCCATAATCTGGCGTGAGCAGCTAGCAATGACTGTAAATACTAAATTACAGTTT
AAAGCAATTAAGTTTTTGGATGGTATTAAAGATCTAAATAAAGAAGATAATTCTGGGCATGAAGTTGATTTATTATTGAT
GGCTGATATCTTTGCAGAACTTATAAATACTATGCAAAACTGGATAGTAGAAGAGAATTAA

Upstream 100 bases:

>100_bases
AATAATTCGATTTAATCTTAAGTTTTATACATTAGGTATTCTACTTTTAGGCTAGATGCTTTATCATTTTGGCATAATTT
ATCAAATTTAGAAATTACTC

Downstream 100 bases:

>100_bases
TACTATGACGTTAAATGAAAATCAACTAAAGGCGTATGAGTATGGCTTAGTACATCATCCAAATCTTAGAGAAGATTGTA
AGGTTTCTTTAGAAGAGGGT

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MFFKNLTAFKITDINIDIFEDSMNKLAFIPCSNSQKSSRGFINPFIKDENCLFKFNHLAAFCLLTEEKILSAQVINQQAQ
EYIEELELTRYVSKKEKTQIKEDMQQKLLPLAFSKFRKTYGYLDLTNNYLVIDSISEKQITEILDLLHRCEARFEPVIKE
ETDILTEWLVDNAYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITEIAIIWREQLAMTVNTKLQF
KAIKFLDGIKDLNKEDNSGHEVDLLLMADIFAELINTMQNWIVEEN

Sequences:

>Translated_286_residues
MFFKNLTAFKITDINIDIFEDSMNKLAFIPCSNSQKSSRGFINPFIKDENCLFKFNHLAAFCLLTEEKILSAQVINQQAQ
EYIEELELTRYVSKKEKTQIKEDMQQKLLPLAFSKFRKTYGYLDLTNNYLVIDSISEKQITEILDLLHRCEARFEPVIKE
ETDILTEWLVDNAYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITEIAIIWREQLAMTVNTKLQF
KAIKFLDGIKDLNKEDNSGHEVDLLLMADIFAELINTMQNWIVEEN
>Mature_286_residues
MFFKNLTAFKITDINIDIFEDSMNKLAFIPCSNSQKSSRGFINPFIKDENCLFKFNHLAAFCLLTEEKILSAQVINQQAQ
EYIEELELTRYVSKKEKTQIKEDMQQKLLPLAFSKFRKTYGYLDLTNNYLVIDSISEKQITEILDLLHRCEARFEPVIKE
ETDILTEWLVDNAYPVDIEIAEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITEIAIIWREQLAMTVNTKLQF
KAIKFLDGIKDLNKEDNSGHEVDLLLMADIFAELINTMQNWIVEEN

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=294, Percent_Identity=25.8503401360544, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 32930; Mature: 32930

Theoretical pI: Translated: 4.46; Mature: 4.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFKNLTAFKITDINIDIFEDSMNKLAFIPCSNSQKSSRGFINPFIKDENCLFKFNHLAA
CCCCCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEHHHHHH
FCLLTEEKILSAQVINQQAQEYIEELELTRYVSKKEKTQIKEDMQQKLLPLAFSKFRKTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYLDLTNNYLVIDSISEKQITEILDLLHRCEARFEPVIKEETDILTEWLVDNAYPVDIEI
CEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEH
AEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITEIAIIWREQLAMTVNTKLQF
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHH
KAIKFLDGIKDLNKEDNSGHEVDLLLMADIFAELINTMQNWIVEEN
HHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MFFKNLTAFKITDINIDIFEDSMNKLAFIPCSNSQKSSRGFINPFIKDENCLFKFNHLAA
CCCCCCEEEEEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEHHHHHH
FCLLTEEKILSAQVINQQAQEYIEELELTRYVSKKEKTQIKEDMQQKLLPLAFSKFRKTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GYLDLTNNYLVIDSISEKQITEILDLLHRCEARFEPVIKEETDILTEWLVDNAYPVDIEI
CEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEH
AEKCKLTSAIGDSIANISCQGSSMLNDNIKSFIDSGGYITEIAIIWREQLAMTVNTKLQF
HHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCHH
KAIKFLDGIKDLNKEDNSGHEVDLLLMADIFAELINTMQNWIVEEN
HHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14528314 [H]