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The map label for this gene is yocS [H]

Identifier: 134302252

GI number: 134302252

Start: 1258007

End: 1258819

Strand: Reverse

Name: yocS [H]

Synonym: FTW_1336

Alternate gene names: 134302252

Gene position: 1258819-1258007 (Counterclockwise)

Preceding gene: 134302253

Following gene: 134302251

Centisome position: 66.31

GC content: 29.89

Gene sequence:

>813_bases
ATGATGAAAATGAACTTTATCCAAAAATATTTTGCGATTATAGTGATAGCGGGAGTTATTTTAGCAATCTCAATACCTTC
TATATTTATACCATTAAAGCCTTATATTACTTATTTATTGGCTGCTTTTATAATTGGTAAGCTCTTTGGTTTGAGCTTAA
CCGCATTGATAGGTTTAGTTATTGTTGGCGCTTGTCCAGGAGGCACGGCTTCTGGAGTGATGGCTTTACTAGCTAGAGCA
AATATATCATTAGTTGTCAGTTTAACTTTTTTGACTACTCTATTAGCGCCAATATTTATGCCATTAATCATTTATTTTTT
CTTTTCAAAGAGTATTAAGTTAGATTGGTTTGGTATGTTTGAAACTATGGCAATAATAGTTATTGTACCGATAGTTTTAG
GAATTTTAATTAGTAAATTTACCAAACTAAATGATTCAACTTTAAAGAAAATCTCTAATATTCCGATACTTTTGATTATG
TTGATAGTAATGGTCGTAACAGCTTTAAACAAAGACACTATGATGCTTGTACCAACCGATATTATTTTAAGCGTTATAAT
ACTCAGTATATTTGCTAATATTTTTGGTTATTTAATAGGTAGGGTTCTAGGTCTAGATATTGATAGTAGGTTAGCATTAT
TATTTGAGTTTAGTATATTAGATGTTGGTTTAGGAATTGTGATAGCTTTAGCTTTCTTTGGTAATCAAGCAGCCATTGCG
GCAACTTTTTATGCAATTTGGCAGAATATTATTGGACCTATAATTGTTAACCTTGTAAATATATGTCGCAATACTAAATT
TAAATCTTCTTAA

Upstream 100 bases:

>100_bases
CTTTCCAAGCTTATTTCTTATTTTAGATGTTATAAAAGATGAAAATCTATTCTTATATTTAATTTTTTATGTAAAATAGT
TCAAAAAAATTTACTTAAGA

Downstream 100 bases:

>100_bases
AATATTTAATTGACAAAAAAGTCTAATTTAGAATAAAATATCTAAAAAGTGGTTTTAGATATCAAAATGAAGCCGGAATT
AAAAACATTTATAAATGTCG

Product: bile acid symporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 270

Protein sequence:

>270_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARA
NISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMFETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIM
LIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIGRVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIA
ATFYAIWQNIIGPIIVNLVNICRNTKFKSS

Sequences:

>Translated_270_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARA
NISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMFETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIM
LIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIGRVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIA
ATFYAIWQNIIGPIIVNLVNICRNTKFKSS
>Mature_270_residues
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAFIIGKLFGLSLTALIGLVIVGACPGGTASGVMALLARA
NISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMFETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIM
LIVMVVTALNKDTMMLVPTDIILSVIILSIFANIFGYLIGRVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIA
ATFYAIWQNIIGPIIVNLVNICRNTKFKSS

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 29404; Mature: 29404

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAFIIGKLFGLSLTALIGLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGACPGGTASGVMALLARANISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMF
HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECHH
IILSVIILSIFANIFGYLIGRVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATFYAIWQNIIGPIIVNLVNICRNTKFKSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MMKMNFIQKYFAIIVIAGVILAISIPSIFIPLKPYITYLLAAFIIGKLFGLSLTALIGLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVGACPGGTASGVMALLARANISLVVSLTFLTTLLAPIFMPLIIYFFFSKSIKLDWFGMF
HHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
ETMAIIVIVPIVLGILISKFTKLNDSTLKKISNIPILLIMLIVMVVTALNKDTMMLVPTD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECHH
IILSVIILSIFANIFGYLIGRVLGLDIDSRLALLFEFSILDVGLGIVIALAFFGNQAAIA
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATFYAIWQNIIGPIIVNLVNICRNTKFKSS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]