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The map label for this gene is radA [H]

Identifier: 134302233

GI number: 134302233

Start: 1238004

End: 1239374

Strand: Direct

Name: radA [H]

Synonym: FTW_1307

Alternate gene names: 134302233

Gene position: 1238004-1239374 (Clockwise)

Preceding gene: 134302232

Following gene: 134302234

Centisome position: 65.21

GC content: 36.32

Gene sequence:

>1371_bases
ATGGCTAAACAAAAAACAGTTTTCATATGCCAAGAATGTGGCGCCACATCTCCACGCTGGCAAGGTCAATGCCATAGTTG
TAACCAATGGAACACTTTTGTAGAAGAGCTTAAATCAGATCCCAAAAAAGTAGTTAAATCTCGCGCTGGATTTGCCGGAA
GTATTTCCAAAGCAACATCACTATCAGCTATCAAAGGTAAAGAACATTCTCGAGTATCTACTCATATCGGTGAGTTTGAT
AGAGTCTTAGGTGGTGGTATTGTCAAAGGTTCAGTAATCTTGGTTGGTGGCGATCCTGGTATAGGTAAGTCTTCGATATT
ACTACAGATAATGTCTTTTTTATCTTTACAAAAAAAAGTCCTATATGTCAGTGGTGAAGAGTCATTAGAGCAAATAGCAC
TTCGTGCTGAGAGATTAAACCTTGCCAAAGATAATCTACTGGTAATGTGTGAAACTAATATTGAACAAATTGCTAGCTAT
ATGGTAGAGCATAAACCTGAAGTTGTAGTAATAGATTCGATTCAAACAATGTATAATCCAGAGATTCAGTCAATGGTTGG
TGGTGTCTCTCAAGTAAGAGAGTCTAGCGCTTACATCACACAAATAGCCAAACAATATGAAATAGCGGTGTTTTTAGTAG
GTCATGTAACAAAATCAGGTGAAGTTGCAGGACCTAGAGTGCTAGAGCATATTGTCGATGCGGTAATATTTATAGAGTCG
CAAGATAATGGTAGATACCGAATGATGCGTGCACTCAAAAACAGATTTGGTGCTGTCAATGAAATTGGCGTCTTTGCAAT
GACTGACAAAGGGATGAAAGAGGTAAAAAATCCTTCCGCAATATTTCTAAATAATGGGCGTACTAATTTAATTGGCAGCG
TGATTGTCTCAGTATGGGAAGGAACTAGGCCTTTATTAGTTGAATTACAGTCACTTGTAGTCGATAAAAATATTAATCAA
CCACCGCGGAGATTATGTGTCGGCATCGATAGTAATCGCCTAGCAATGATACTAGCTATTATACAACGCTATATGCATAT
TGATTTATATGATAAAGATGTCTTTTTAAATGTAGTTGGTGGTATAAAGATTAATGAAACTAGCATTGATTTGGCACTGA
TTTTAATTATCTACTCTAGTATCAAGGAAATAGAAATTCCTCATGATATGCTTATAATGGGAGAAGTTGGTTTATCTGGT
GAGATTCGCCCTATCCCATATGGAATTGAGAGAATAAACGAAGCCAAAAAACATGGTTTTAAGAAAATTATTGTGCCACA
GGCAAATGTTTCAAAATCGTTAAAAACTGCAGATATTGAGATCATTGGTATAACCAACTTAAACCAAATAAAAGATATAA
TCACAGGGTAA

Upstream 100 bases:

>100_bases
AAATACCGCTATATTGTACAATTTATAGGCCCCAATGCTTCAGAAACTGAGAGAGTACTTTCAAAATATTTATTAGGATA
TAAACAAAAGTAAATAAACT

Downstream 100 bases:

>100_bases
CAAAATGGAATTTCTATCAAGCCTTAATTTTTTAGATATTTTAATAATGATAGTCATCTTAATCTTAAGTCTATTTGCCG
CTGTTAAAGGATTATTTAAA

Product: DNA repair protein RadA

Products: NA

Alternate protein names: DNA repair protein sms homolog [H]

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MAKQKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATSLSAIKGKEHSRVSTHIGEFD
RVLGGGIVKGSVILVGGDPGIGKSSILLQIMSFLSLQKKVLYVSGEESLEQIALRAERLNLAKDNLLVMCETNIEQIASY
MVEHKPEVVVIDSIQTMYNPEIQSMVGGVSQVRESSAYITQIAKQYEIAVFLVGHVTKSGEVAGPRVLEHIVDAVIFIES
QDNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWEGTRPLLVELQSLVVDKNINQ
PPRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVGGIKINETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSG
EIRPIPYGIERINEAKKHGFKKIIVPQANVSKSLKTADIEIIGITNLNQIKDIITG

Sequences:

>Translated_456_residues
MAKQKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATSLSAIKGKEHSRVSTHIGEFD
RVLGGGIVKGSVILVGGDPGIGKSSILLQIMSFLSLQKKVLYVSGEESLEQIALRAERLNLAKDNLLVMCETNIEQIASY
MVEHKPEVVVIDSIQTMYNPEIQSMVGGVSQVRESSAYITQIAKQYEIAVFLVGHVTKSGEVAGPRVLEHIVDAVIFIES
QDNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWEGTRPLLVELQSLVVDKNINQ
PPRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVGGIKINETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSG
EIRPIPYGIERINEAKKHGFKKIIVPQANVSKSLKTADIEIIGITNLNQIKDIITG
>Mature_455_residues
AKQKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATSLSAIKGKEHSRVSTHIGEFDR
VLGGGIVKGSVILVGGDPGIGKSSILLQIMSFLSLQKKVLYVSGEESLEQIALRAERLNLAKDNLLVMCETNIEQIASYM
VEHKPEVVVIDSIQTMYNPEIQSMVGGVSQVRESSAYITQIAKQYEIAVFLVGHVTKSGEVAGPRVLEHIVDAVIFIESQ
DNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWEGTRPLLVELQSLVVDKNINQP
PRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVGGIKINETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSGE
IRPIPYGIERINEAKKHGFKKIIVPQANVSKSLKTADIEIIGITNLNQIKDIITG

Specific function: May play a role in the repair of endogenous alkylation damage [H]

COG id: COG1066

COG function: function code O; Predicted ATP-dependent serine protease

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recA family. RadA subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790850, Length=453, Percent_Identity=52.317880794702, Blast_Score=489, Evalue=1e-139,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR014774
- InterPro:   IPR004504
- InterPro:   IPR008269
- InterPro:   IPR020568 [H]

Pfam domain/function: PF06745 KaiC; PF05362 Lon_C [H]

EC number: NA

Molecular weight: Translated: 50270; Mature: 50139

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50162 RECA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATS
CCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHH
LSAIKGKEHSRVSTHIGEFDRVLGGGIVKGSVILVGGDPGIGKSSILLQIMSFLSLQKKV
HHHHCCCCCCHHHHHHHHHHHHHCCCEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHEE
LYVSGEESLEQIALRAERLNLAKDNLLVMCETNIEQIASYMVEHKPEVVVIDSIQTMYNP
EEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECHHHHHCC
EIQSMVGGVSQVRESSAYITQIAKQYEIAVFLVGHVTKSGEVAGPRVLEHIVDAVIFIES
HHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHEEEEEEE
QDNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWE
CCCCHHHHHHHHHHHCCCHHHCEEEEECCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
GTRPLLVELQSLVVDKNINQPPRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVG
CCCHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHCCEEECCCEEEEEEC
GIKINETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSGEIRPIPYGIERINEAKKHGF
CEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
KKIIVPQANVSKSLKTADIEIIGITNLNQIKDIITG
EEEEECCCCCCCCCEECCEEEEEECCHHHHHHHHCC
>Mature Secondary Structure 
AKQKTVFICQECGATSPRWQGQCHSCNQWNTFVEELKSDPKKVVKSRAGFAGSISKATS
CCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHHH
LSAIKGKEHSRVSTHIGEFDRVLGGGIVKGSVILVGGDPGIGKSSILLQIMSFLSLQKKV
HHHHCCCCCCHHHHHHHHHHHHHCCCEEECEEEEEECCCCCCHHHHHHHHHHHHHHHHEE
LYVSGEESLEQIALRAERLNLAKDNLLVMCETNIEQIASYMVEHKPEVVVIDSIQTMYNP
EEEECHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECHHHHHCC
EIQSMVGGVSQVRESSAYITQIAKQYEIAVFLVGHVTKSGEVAGPRVLEHIVDAVIFIES
HHHHHHCCHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCHHHHHHHHHEEEEEEE
QDNGRYRMMRALKNRFGAVNEIGVFAMTDKGMKEVKNPSAIFLNNGRTNLIGSVIVSVWE
CCCCHHHHHHHHHHHCCCHHHCEEEEECCHHHHHHCCCCEEEEECCCCHHHHHHHHHHHC
GTRPLLVELQSLVVDKNINQPPRRLCVGIDSNRLAMILAIIQRYMHIDLYDKDVFLNVVG
CCCHHHHHHHHHHHCCCCCCCHHHEEEECCCCHHHHHHHHHHHHHCCEEECCCEEEEEEC
GIKINETSIDLALILIIYSSIKEIEIPHDMLIMGEVGLSGEIRPIPYGIERINEAKKHGF
CEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCC
KKIIVPQANVSKSLKTADIEIIGITNLNQIKDIITG
EEEEECCCCCCCCCEECCEEEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]