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The map label for this gene is rnfB [H]

Identifier: 134302046

GI number: 134302046

Start: 1019902

End: 1020531

Strand: Direct

Name: rnfB [H]

Synonym: FTW_1080

Alternate gene names: 134302046

Gene position: 1019902-1020531 (Clockwise)

Preceding gene: 134302045

Following gene: 134302047

Centisome position: 53.72

GC content: 33.17

Gene sequence:

>630_bases
ATGATTATATCTATAGAAGCAATTGATAAAGTATTACCACAAACACAATGTCAAAAGTGTACTTATCCTGATTGTTATAG
CTATGCTAAAGCTATAACAAATGGCGAAAAACATAATAAATGTATTACAGGTGGAGAGAAGACTTTAAAGGAGCTAGCAA
AACTTTTAAATAAGCCTGAAATCCCTTTAGATAGCTCACTAGGACAAGAAAAACCTCGAGCTGTTGCAAAAATTGATGAA
TCAATGTGTATTGGTTGTGAGAAATGCTTACTTGCATGTCCTGTTGATGCTATAGTAGGCGCAAAAAAACTCATGCACAC
TATAATTGAAGCCGAATGTACAGGCTGTGAACTATGTGTAGAACCATGTCCAATGGATTGTATATCTTTGGTAGATTTAG
CTGCAGATAAACAACCAAATAATCTAACTAATCATGCTTATACAACACAAAAAAATCACTATCGTGATAGGTACGAATAT
CATAAGCAGAGAGTAAGTCAAACAAAGGCTAAACAAAGAGATGTTTACAAAAACATCGCAACTGCTCAAGAAATTGATAA
AAAAGCCTATATAGCTGCTTCATTAGCTAAGTTTAGAAATAAAAAGAAATCTTCACCAACCAATGAATAA

Upstream 100 bases:

>100_bases
TTTATCCTAACAATGTCTAAGGATTTGCTTGAAATACCAACAAATATTACCAACTATATCAAAAATATCGAAGCAAAAAC
AAACATAGAATTGTACTAAA

Downstream 100 bases:

>100_bases
GCAAAAAAGAATCCAGATTTTTGAAACATGGAAACAAAATGACCCAAAACCAACAACAGAACTTGAGTATACATCTAATT
TTGAACTTCTAATTGCAGTA

Product: electron transport complex, RnfABCDGE type, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MIISIEAIDKVLPQTQCQKCTYPDCYSYAKAITNGEKHNKCITGGEKTLKELAKLLNKPEIPLDSSLGQEKPRAVAKIDE
SMCIGCEKCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEY
HKQRVSQTKAKQRDVYKNIATAQEIDKKAYIAASLAKFRNKKKSSPTNE

Sequences:

>Translated_209_residues
MIISIEAIDKVLPQTQCQKCTYPDCYSYAKAITNGEKHNKCITGGEKTLKELAKLLNKPEIPLDSSLGQEKPRAVAKIDE
SMCIGCEKCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEY
HKQRVSQTKAKQRDVYKNIATAQEIDKKAYIAASLAKFRNKKKSSPTNE
>Mature_209_residues
MIISIEAIDKVLPQTQCQKCTYPDCYSYAKAITNGEKHNKCITGGEKTLKELAKLLNKPEIPLDSSLGQEKPRAVAKIDE
SMCIGCEKCLLACPVDAIVGAKKLMHTIIEAECTGCELCVEPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEY
HKQRVSQTKAKQRDVYKNIATAQEIDKKAYIAASLAKFRNKKKSSPTNE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=132, Percent_Identity=55.3030303030303, Blast_Score=146, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 23358; Mature: 23358

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
8.1 %Cys+Met (Translated Protein)
6.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
8.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIISIEAIDKVLPQTQCQKCTYPDCYSYAKAITNGEKHNKCITGGEKTLKELAKLLNKPE
CEEEHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCC
IPLDSSLGQEKPRAVAKIDESMCIGCEKCLLACPVDAIVGAKKLMHTIIEAECTGCELCV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHCC
EPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEYHKQRVSQTKAKQRDVYKNIA
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAQEIDKKAYIAASLAKFRNKKKSSPTNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIISIEAIDKVLPQTQCQKCTYPDCYSYAKAITNGEKHNKCITGGEKTLKELAKLLNKPE
CEEEHHHHHHHHCHHHHHCCCCCHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHCCCC
IPLDSSLGQEKPRAVAKIDESMCIGCEKCLLACPVDAIVGAKKLMHTIIEAECTGCELCV
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHCC
EPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEYHKQRVSQTKAKQRDVYKNIA
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAQEIDKKAYIAASLAKFRNKKKSSPTNE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA