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The map label for this gene is yodJ [H]

Identifier: 134301974

GI number: 134301974

Start: 946158

End: 946631

Strand: Reverse

Name: yodJ [H]

Synonym: FTW_0992

Alternate gene names: 134301974

Gene position: 946631-946158 (Counterclockwise)

Preceding gene: 134301975

Following gene: 134301973

Centisome position: 49.86

GC content: 33.76

Gene sequence:

>474_bases
ATGGTAAGAAAAATAATTTTTCCAGAAGCAAAAGAGCATGAGCTTATTTCGGCAGGTAAAGATTTTTTTGCTAGAGATTT
ACTTTTAGAGAAAAATACTTATAAAGCTTGGTTAGAGCTAAAACAAGCAGCGACTGATGATGGTATTAGTCTATTTATAG
TTTCAGGTTTTAGAAGCTATGAATATCAGCAGAAAATTATAGATAGAAAGCTTGCTAATGGACAAACTTTAGAAGAGATT
ATCAGGGTAAATGCTTTGCCAGGAGAGAGTGAGCATCATACGGGTAGGGCTATTGATCTAACAACTGGGGATGAAAAAGA
GGTTTTGACAGAGGATTTTGAAAAAACTTATGCTTTTGAGTGGTTAGTTAAAAATGCACATAAATATGGCTTTAAGTTGA
GTTTCCCATGCAATAATGACTATGGTTTTATATATGAGCCATGGCACTGGTGTTATCACAATGAAAAATGTTAG

Upstream 100 bases:

>100_bases
TCAATAAACTAAACTTACGTAATGCTGAAGATAGTATTAGCGATATTTCTGCACACCATAGTTATCTTAGTAATTTGCTA
AAACTAGAAGAAGATGCAAA

Downstream 100 bases:

>100_bases
TAGATTTTTATTTGTAAGTATATTTGCAATATTACTAAACTCTTGTAGTACAGCAAAGAAAGATGTCACAAAACTCGAAT
TTGTTTCTAGTAGTTATCCT

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAATDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLVKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC

Sequences:

>Translated_157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAATDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLVKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
>Mature_157_residues
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAATDDGISLFIVSGFRSYEYQQKIIDRKLANGQTLEEI
IRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFEWLVKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 18417; Mature: 18417

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAATDDGISLFIVSGFRSY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCH
EYQQKIIDRKLANGQTLEEIIRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
WLVKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
HHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCCCC
>Mature Secondary Structure
MVRKIIFPEAKEHELISAGKDFFARDLLLEKNTYKAWLELKQAATDDGISLFIVSGFRSY
CCCCCCCCCCCCHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECCCCH
EYQQKIIDRKLANGQTLEEIIRVNALPGESEHHTGRAIDLTTGDEKEVLTEDFEKTYAFE
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHH
WLVKNAHKYGFKLSFPCNNDYGFIYEPWHWCYHNEKC
HHHHHHHHCCEEEECCCCCCCCEEECCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]