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The map label for this gene is srpS [H]

Identifier: 134301706

GI number: 134301706

Start: 642962

End: 643681

Strand: Direct

Name: srpS [H]

Synonym: FTW_0657

Alternate gene names: 134301706

Gene position: 642962-643681 (Clockwise)

Preceding gene: 134301705

Following gene: 134301708

Centisome position: 33.87

GC content: 32.36

Gene sequence:

>720_bases
ATGAGTGAAGACAAAAGAATTCAAGTAATAAGTAGAGCTGTTAATGTATTGAAAAGTATAGGTAGTAAACCAGATGGTAT
GAGTCTAGGTGAGATTGCTAAACAGATATATTTACCGCGCTCTACAGTACAAAGAATAGTAGCTGCTTTGGAAGAGGAAG
GTTTTATAAAAAGCGAGGGAGCCGGAAAAATATTACTCGGTCCAGGAATCTTTAAGTTAATTTCTTCCAGCTACGCTGAC
ATTATATCATTAACACAAGATTCATTAAGTAAACTTAGTGCAAAAATACAGGAGACAGTAGTAATAACTCAGCCTTATGA
TTCAGATCTGCTGATAGTACATAGATTTATTATAAATAGAGAATTGCAAGTACTTCCAAGGGTTGGTGCATTAATACCTA
TATATAACTCATCTTCTGGTAGAGCGATTCTAGCTTTACATACAGATGATAAAATTATTGAAATCTTAGGTGAGCAAATT
CCTGATGACAAAGAACTATTTGAAAAAATTGCAAAAATAAGAGCTGATGGTATCGAATTTGACTATGGTAAAGTTATAAA
AGGCATAGTTAGTATAGGTGTAGCAATAAATACTTTTTTAGGAACTTTTGGGATTTCGATACTTACACCACAGCATCGTT
TTGATAAATACAAGGAGTTTTACGTTAATGAGTTATTAAAGACGAAGTCAAAAATTATAGATGAGATTGGGATTAAATAA

Upstream 100 bases:

>100_bases
TTAAGTATTTTTTAAGATTATACAATAAGTTTTGGCATTTTACATTTAAAAAAGTTATTATAAGCATTAAAATATAAAAA
AATGTTGGGTAATTACTATT

Downstream 100 bases:

>100_bases
TCTAAAAAATTACTAGTAATTTTCTAAGAGTAACTTTCTAACTATTTAGAGAATGTTTCTTATTTAAGATATTTATCAAG
GAATTTAAATACAAGTTCTA

Product: IclR family transcriptional regulator

Products: NA

Alternate protein names: Solvent efflux pump srpABC operon corepressor [H]

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSEDKRIQVISRAVNVLKSIGSKPDGMSLGEIAKQIYLPRSTVQRIVAALEEEGFIKSEGAGKILLGPGIFKLISSSYAD
IISLTQDSLSKLSAKIQETVVITQPYDSDLLIVHRFIINRELQVLPRVGALIPIYNSSSGRAILALHTDDKIIEILGEQI
PDDKELFEKIAKIRADGIEFDYGKVIKGIVSIGVAINTFLGTFGISILTPQHRFDKYKEFYVNELLKTKSKIIDEIGIK

Sequences:

>Translated_239_residues
MSEDKRIQVISRAVNVLKSIGSKPDGMSLGEIAKQIYLPRSTVQRIVAALEEEGFIKSEGAGKILLGPGIFKLISSSYAD
IISLTQDSLSKLSAKIQETVVITQPYDSDLLIVHRFIINRELQVLPRVGALIPIYNSSSGRAILALHTDDKIIEILGEQI
PDDKELFEKIAKIRADGIEFDYGKVIKGIVSIGVAINTFLGTFGISILTPQHRFDKYKEFYVNELLKTKSKIIDEIGIK
>Mature_238_residues
SEDKRIQVISRAVNVLKSIGSKPDGMSLGEIAKQIYLPRSTVQRIVAALEEEGFIKSEGAGKILLGPGIFKLISSSYADI
ISLTQDSLSKLSAKIQETVVITQPYDSDLLIVHRFIINRELQVLPRVGALIPIYNSSSGRAILALHTDDKIIEILGEQIP
DDKELFEKIAKIRADGIEFDYGKVIKGIVSIGVAINTFLGTFGISILTPQHRFDKYKEFYVNELLKTKSKIIDEIGIK

Specific function: In conjunction with srpR represses the srpABC operon [H]

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI87082359, Length=206, Percent_Identity=21.8446601941748, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 26457; Mature: 26326

Theoretical pI: Translated: 8.72; Mature: 8.72

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEDKRIQVISRAVNVLKSIGSKPDGMSLGEIAKQIYLPRSTVQRIVAALEEEGFIKSEG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCC
AGKILLGPGIFKLISSSYADIISLTQDSLSKLSAKIQETVVITQPYDSDLLIVHRFIINR
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
ELQVLPRVGALIPIYNSSSGRAILALHTDDKIIEILGEQIPDDKELFEKIAKIRADGIEF
HHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DYGKVIKGIVSIGVAINTFLGTFGISILTPQHRFDKYKEFYVNELLKTKSKIIDEIGIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SEDKRIQVISRAVNVLKSIGSKPDGMSLGEIAKQIYLPRSTVQRIVAALEEEGFIKSEG
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCC
AGKILLGPGIFKLISSSYADIISLTQDSLSKLSAKIQETVVITQPYDSDLLIVHRFIINR
CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHHHHCC
ELQVLPRVGALIPIYNSSSGRAILALHTDDKIIEILGEQIPDDKELFEKIAKIRADGIEF
HHHHHHCCCCEEEEEECCCCCEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
DYGKVIKGIVSIGVAINTFLGTFGISILTPQHRFDKYKEFYVNELLKTKSKIIDEIGIK
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA