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The map label for this gene is ydhJ [H]

Identifier: 134301704

GI number: 134301704

Start: 641725

End: 642570

Strand: Reverse

Name: ydhJ [H]

Synonym: FTW_0655

Alternate gene names: 134301704

Gene position: 642570-641725 (Counterclockwise)

Preceding gene: 134301707

Following gene: 134301703

Centisome position: 33.85

GC content: 33.81

Gene sequence:

>846_bases
ATGTCAAACAAAAATACTAAATCTATAATCAGTATAATAATTATTTTATTTGCTCTTTTTTCACTGTATGCAATGTGGCA
ATATTATCTTTATTCACCTTGGACAAGAGATGGTAGAATCCGCGCAAAAATTATCACAATAGCACCTGATGTATCAAATA
TGTACGTCAGTGATAACCAAAAAGTTAAAAAAGGACAGCTAATTTTCACAATAGATGACCAAAGATATGCTGCAACTCTA
GAAGGTAAAGAAGCGGAATTAAAACATGCCATGATCGAATGGCAGCTTGCAGAAAAGCAGTATTTAAGAAGAATTAGACT
AGGCAGAGATGACTCAATAAGTAGAGAAGAGCTAGATGATTATGCAATGCAAGAAAAACTAAGAAAAGCTGATCTTGAAA
AAGCCAAAGCTGAAGCTGAATTAGCTAAGATTAACCTAGACAGAACAAAGATATATGCTCCTGCTGATGGAACTATCAAC
AACATTGACCTAAGACAAGGCAATTATGTAGTATCTTCTAAACCAGTAATGTCTTTAGTAAAAGCTGGCTCATTTTATGT
CACCGGATATTTTGAGGAAACTAAACTACCGCATATTAAAATAGGTGACAAAGCCAAAATAATACTTATGAGTGGTGGAG
AGCCATTATATGGACATGTGATAAGTATAGGTAAGGCAGTCGCTGATAATAATACTGATGTAAATAATCAACTTTTACCC
AAAGTACAAGAAACCTATGACTGGGTAAGACTATCCAAAAGAATTCCTGTTGATATTGCTCTAGATAAAGTACCAATCAA
TACAGAACTTGTATCAGGAATGAATGCAACGGTAACTATAAAATGA

Upstream 100 bases:

>100_bases
CTTAAGTCTAAGAAGTATACTAATCTAAAGCTTTCCTGGCTAAATTTAGCAATTTTCCTATGTTATCTTGGACTAGTTAT
GTTTATACTTGGGGATTAAT

Downstream 100 bases:

>100_bases
TAAAAGAATTGATAGATGATATACCTACGATCTTTAATACACAAAATGCTATACATACATTTAAGGCATGTATAGCTATT
ACTCTAGCACTTGGAATATC

Product: RND efflux transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MSNKNTKSIISIIIILFALFSLYAMWQYYLYSPWTRDGRIRAKIITIAPDVSNMYVSDNQKVKKGQLIFTIDDQRYAATL
EGKEAELKHAMIEWQLAEKQYLRRIRLGRDDSISREELDDYAMQEKLRKADLEKAKAEAELAKINLDRTKIYAPADGTIN
NIDLRQGNYVVSSKPVMSLVKAGSFYVTGYFEETKLPHIKIGDKAKIILMSGGEPLYGHVISIGKAVADNNTDVNNQLLP
KVQETYDWVRLSKRIPVDIALDKVPINTELVSGMNATVTIK

Sequences:

>Translated_281_residues
MSNKNTKSIISIIIILFALFSLYAMWQYYLYSPWTRDGRIRAKIITIAPDVSNMYVSDNQKVKKGQLIFTIDDQRYAATL
EGKEAELKHAMIEWQLAEKQYLRRIRLGRDDSISREELDDYAMQEKLRKADLEKAKAEAELAKINLDRTKIYAPADGTIN
NIDLRQGNYVVSSKPVMSLVKAGSFYVTGYFEETKLPHIKIGDKAKIILMSGGEPLYGHVISIGKAVADNNTDVNNQLLP
KVQETYDWVRLSKRIPVDIALDKVPINTELVSGMNATVTIK
>Mature_280_residues
SNKNTKSIISIIIILFALFSLYAMWQYYLYSPWTRDGRIRAKIITIAPDVSNMYVSDNQKVKKGQLIFTIDDQRYAATLE
GKEAELKHAMIEWQLAEKQYLRRIRLGRDDSISREELDDYAMQEKLRKADLEKAKAEAELAKINLDRTKIYAPADGTINN
IDLRQGNYVVSSKPVMSLVKAGSFYVTGYFEETKLPHIKIGDKAKIILMSGGEPLYGHVISIGKAVADNNTDVNNQLLPK
VQETYDWVRLSKRIPVDIALDKVPINTELVSGMNATVTIK

Specific function: Unknown

COG id: COG1566

COG function: function code V; Multidrug resistance efflux pump

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=284, Percent_Identity=39.7887323943662, Blast_Score=209, Evalue=2e-55,
Organism=Escherichia coli, GI1789637, Length=283, Percent_Identity=37.1024734982332, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1790519, Length=298, Percent_Identity=28.5234899328859, Blast_Score=104, Evalue=6e-24,
Organism=Escherichia coli, GI1788711, Length=324, Percent_Identity=25.3086419753086, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789041, Length=265, Percent_Identity=26.0377358490566, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87081796, Length=243, Percent_Identity=24.2798353909465, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 31894; Mature: 31763

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKNTKSIISIIIILFALFSLYAMWQYYLYSPWTRDGRIRAKIITIAPDVSNMYVSDNQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEECCCC
KVKKGQLIFTIDDQRYAATLEGKEAELKHAMIEWQLAEKQYLRRIRLGRDDSISREELDD
EEECCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YAMQEKLRKADLEKAKAEAELAKINLDRTKIYAPADGTINNIDLRQGNYVVSSKPVMSLV
HHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEEEEECCCCEEEECCHHHHHH
KAGSFYVTGYFEETKLPHIKIGDKAKIILMSGGEPLYGHVISIGKAVADNNTDVNNQLLP
HCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHH
KVQETYDWVRLSKRIPVDIALDKVPINTELVSGMNATVTIK
HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCEEEEEC
>Mature Secondary Structure 
SNKNTKSIISIIIILFALFSLYAMWQYYLYSPWTRDGRIRAKIITIAPDVSNMYVSDNQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEECCCC
KVKKGQLIFTIDDQRYAATLEGKEAELKHAMIEWQLAEKQYLRRIRLGRDDSISREELDD
EEECCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
YAMQEKLRKADLEKAKAEAELAKINLDRTKIYAPADGTINNIDLRQGNYVVSSKPVMSLV
HHHHHHHHHHHHHHHHHHHHHHEEECCCEEEEECCCCCEEEEEECCCCEEEECCHHHHHH
KAGSFYVTGYFEETKLPHIKIGDKAKIILMSGGEPLYGHVISIGKAVADNNTDVNNQLLP
HCCCEEEEEEEECCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCHHHH
KVQETYDWVRLSKRIPVDIALDKVPINTELVSGMNATVTIK
HHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]