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The map label for this gene is ygdK [C]

Identifier: 134301550

GI number: 134301550

Start: 465987

End: 466403

Strand: Direct

Name: ygdK [C]

Synonym: FTW_0479

Alternate gene names: 134301550

Gene position: 465987-466403 (Clockwise)

Preceding gene: 134301549

Following gene: 134301551

Centisome position: 24.55

GC content: 31.89

Gene sequence:

>417_bases
ATGGAAAATCAAGTTGTACAAAAACAGCAAGAATTAGTCGAAGAGCTATCATTTTTTGAGGATTGGGAAGATAAGTATGA
TTATGTTATTTCATTAGCTAAGCAGCTACCAGAATTCCCTGAGGAGAAAAAGACCGAAGAAAATTTAGTCAAAGGTTGCC
AATCACAGGTTTGGTTTGATAGTAATATAGATCAAGGTAAGCTAAATTTTATAGCTACAAGTGATGCTTTGATAGTCTCT
GGTTTAATAGGAATGCTTTTAAGAGTTTATAATAATGCTACTCCTGCAGAAATACTAGCTTCAAATACTGATTTTATTAA
GCAGATAGGTTTTGGTAATAATTTAAGTACAACACGTGCCAATGGCTTAAAATCAATGCTTGATTATATATATGCTACAG
CTAAACAAAATCAGTAA

Upstream 100 bases:

>100_bases
AGATCTCTGAATATTAAGTTTTTAACAAGTTTATATACTTAGATGTATATGATAAGATATCCTAAATCAAAAAATACTAC
TAATAGAATTAATATAAGTA

Downstream 100 bases:

>100_bases
ATGAAAATACTAGTTTGTCGCCCTCAGAATGATGCTGTCAATTTAACAGAAAAACTCTGTGCAAATGGTCTTTTAGCGGT
AAGTTTACCAACTATCAAAA

Product: putative regulator of cysteine desulfurase activity

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MENQVVQKQQELVEELSFFEDWEDKYDYVISLAKQLPEFPEEKKTEENLVKGCQSQVWFDSNIDQGKLNFIATSDALIVS
GLIGMLLRVYNNATPAEILASNTDFIKQIGFGNNLSTTRANGLKSMLDYIYATAKQNQ

Sequences:

>Translated_138_residues
MENQVVQKQQELVEELSFFEDWEDKYDYVISLAKQLPEFPEEKKTEENLVKGCQSQVWFDSNIDQGKLNFIATSDALIVS
GLIGMLLRVYNNATPAEILASNTDFIKQIGFGNNLSTTRANGLKSMLDYIYATAKQNQ
>Mature_138_residues
MENQVVQKQQELVEELSFFEDWEDKYDYVISLAKQLPEFPEEKKTEENLVKGCQSQVWFDSNIDQGKLNFIATSDALIVS
GLIGMLLRVYNNATPAEILASNTDFIKQIGFGNNLSTTRANGLKSMLDYIYATAKQNQ

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=117, Percent_Identity=36.7521367521368, Blast_Score=84, Evalue=2e-18,
Organism=Escherichia coli, GI1787969, Length=108, Percent_Identity=35.1851851851852, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15680; Mature: 15680

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENQVVQKQQELVEELSFFEDWEDKYDYVISLAKQLPEFPEEKKTEENLVKGCQSQVWFD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
SNIDQGKLNFIATSDALIVSGLIGMLLRVYNNATPAEILASNTDFIKQIGFGNNLSTTRA
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCHHHH
NGLKSMLDYIYATAKQNQ
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MENQVVQKQQELVEELSFFEDWEDKYDYVISLAKQLPEFPEEKKTEENLVKGCQSQVWFD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
SNIDQGKLNFIATSDALIVSGLIGMLLRVYNNATPAEILASNTDFIKQIGFGNNLSTTRA
CCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHCCCCCCCHHHH
NGLKSMLDYIYATAKQNQ
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]