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The map label for this gene is arcB [H]

Identifier: 134301481

GI number: 134301481

Start: 386283

End: 387218

Strand: Direct

Name: arcB [H]

Synonym: FTW_0394

Alternate gene names: 134301481

Gene position: 386283-387218 (Clockwise)

Preceding gene: 134301480

Following gene: 134301482

Centisome position: 20.35

GC content: 35.68

Gene sequence:

>936_bases
TTGAGTAAAACAAGACTTTATTCGTGGAGTGAATTTGATAAATCGCCACGATATGCAGCACATGTACCAGGTGGTGTGTT
AGAACTTATGCCGACAGCAGATAAGGAACTATTTACCTATAAGTATGTAAATGGTCATCCAGGAAATCCAAAATATGGTA
AACAAACAGTAATTGCTACAGGTCAGTTAAGTGAAATTAAGCATGGTTATCCGTTATTAATATCTGAGATGACCATTCTT
ACTGCATTAAGAACAGCTGCTGCAACTATTTTAGCAACTGATTATCTAGCGCGTAAAGACAGTAAAACTATGGCATTAAT
AGGTACAGGTGCCCAAAGCGAATTTCAGACTTTAGCACATAAGTTAATTAGACCTATACAGACAGTTAGATATTTTGATA
CAGATCCACAAGCTATGAAAAAATATGCTAACAATATGAAAGATGTCGATCTTGAGTTTATAGCTTGTGATAGTGCTAAA
GAGGCTTGTGAGGGTGCTGATATTATTGTTGTATGTACTGCTTGTAAGCTTCACGCAATTGTTATTGAAAATGACTGGAT
CAAAGAAGGTGTTCATATCAGTGGCTTAGGAGGTGATTGCCCTGGTAAAACCGAGCTTGATATGGATATTCTTTTTAGAG
GTAAGGTTGTAGTTGAGTATAAAGAGCAGTCAATGATTGAGGGCGAAATTCAAAATTTATCTCCACAACAAGTAGAACAG
GTACTTCATGCAGAGGTTTGGGAAATCTTAACAGGTAACAAGAAGGGTTGTGAGAATGATAAAGAAATCACAATTTATGA
TTCAGTTGGTTTTGCAATTGAAGATTTCTCAGCTTTACGTTTAACTTTAGATCTGGCTGAAAAATATGATATTGGCAGTC
AGATGGATATGGTTCCACCGATAAAAGATCCTAAAAACTTATTTTCAGTTCTTTAA

Upstream 100 bases:

>100_bases
TTAAGAATTAATGAAGGGGGTAATATGAGAATTTTATCAGTCCAAGATATGGCAAAAATAGTGCAGAAGCATGGTTTTAA
TAATTTTATAACAGATCTTG

Downstream 100 bases:

>100_bases
TCTATATTTATTATTTTATTATCAGCTTATATAAGTTTATAATTTCTATTATTTACTAGTAAATTTTACTATGAGTTTTG
ATAACCTGCTTCTAATGACA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MSKTRLYSWSEFDKSPRYAAHVPGGVLELMPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTIL
TALRTAAATILATDYLARKDSKTMALIGTGAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAK
EACEGADIIVVCTACKLHAIVIENDWIKEGVHISGLGGDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQ
VLHAEVWEILTGNKKGCENDKEITIYDSVGFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL

Sequences:

>Translated_311_residues
MSKTRLYSWSEFDKSPRYAAHVPGGVLELMPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTIL
TALRTAAATILATDYLARKDSKTMALIGTGAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAK
EACEGADIIVVCTACKLHAIVIENDWIKEGVHISGLGGDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQ
VLHAEVWEILTGNKKGCENDKEITIYDSVGFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL
>Mature_310_residues
SKTRLYSWSEFDKSPRYAAHVPGGVLELMPTADKELFTYKYVNGHPGNPKYGKQTVIATGQLSEIKHGYPLLISEMTILT
ALRTAAATILATDYLARKDSKTMALIGTGAQSEFQTLAHKLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKE
ACEGADIIVVCTACKLHAIVIENDWIKEGVHISGLGGDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQV
LHAEVWEILTGNKKGCENDKEITIYDSVGFAIEDFSALRLTLDLAEKYDIGSQMDMVPPIKDPKNLFSVL

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=269, Percent_Identity=27.5092936802974, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI62241008, Length=269, Percent_Identity=27.5092936802974, Blast_Score=89, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 34576; Mature: 34445

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKTRLYSWSEFDKSPRYAAHVPGGVLELMPTADKELFTYKYVNGHPGNPKYGKQTVIAT
CCCCCCCCHHHHCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEC
GQLSEIKHGYPLLISEMTILTALRTAAATILATDYLARKDSKTMALIGTGAQSEFQTLAH
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
KLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKEACEGADIIVVCTACKLHAI
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHCCCCEEEEEECCEEEEE
VIENDWIKEGVHISGLGGDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQ
EEECCHHHCCCEEECCCCCCCCCCCCCEEEEEECEEEEEECCHHHHHHHHHCCCHHHHHH
VLHAEVWEILTGNKKGCENDKEITIYDSVGFAIEDFSALRLTLDLAEKYDIGSQMDMVPP
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEECCCCEEEEEEEHHHHCCCCCCCCCCCC
IKDPKNLFSVL
CCCHHHHHHCC
>Mature Secondary Structure 
SKTRLYSWSEFDKSPRYAAHVPGGVLELMPTADKELFTYKYVNGHPGNPKYGKQTVIAT
CCCCCCCHHHHCCCCCEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCCCCEEEEEC
GQLSEIKHGYPLLISEMTILTALRTAAATILATDYLARKDSKTMALIGTGAQSEFQTLAH
CCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH
KLIRPIQTVRYFDTDPQAMKKYANNMKDVDLEFIACDSAKEACEGADIIVVCTACKLHAI
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEECCHHHHHCCCCEEEEEECCEEEEE
VIENDWIKEGVHISGLGGDCPGKTELDMDILFRGKVVVEYKEQSMIEGEIQNLSPQQVEQ
EEECCHHHCCCEEECCCCCCCCCCCCCEEEEEECEEEEEECCHHHHHHHHHCCCHHHHHH
VLHAEVWEILTGNKKGCENDKEITIYDSVGFAIEDFSALRLTLDLAEKYDIGSQMDMVPP
HHHHHHHHHHCCCCCCCCCCCEEEEEECCCCEECCCCEEEEEEEHHHHCCCCCCCCCCCC
IKDPKNLFSVL
CCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3281832; 8045881; 11743193; 11743194 [H]